Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G061900 Manihot esculenta HOM05D003316 ORTHO05D003690 6.3e-72 274.2 164 100.0
Potri.011G153600 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.4e-31 139.4 171 52.0
Potri.001G446800 Populus trichocarpa HOM05D003316 ORTHO05D003690 7.0e-31 137.9 166 51.2
Sabra16G0301800 Salix brachista HOM05D003316 ORTHO05D003690 2.7e-30 136.0 165 50.3
Sabra11G0146100 Salix brachista HOM05D003316 ORTHO05D003690 3.4e-25 119.0 167 50.3
Dinv19599 Davidia involucrata HOM05D003316 ORTHO05D003690 7.5e-25 117.9 165 46.7
Dinv42487 Davidia involucrata HOM05D003316 ORTHO05D003690 6.0e-22 108.2 169 41.4
DCAR_016833 Daucus carota HOM05D003316 ORTHO05D003690 1.3e-21 107.1 170 42.9
DCAR_013730 Daucus carota HOM05D003316 ORTHO05D003690 5.1e-21 105.1 173 43.4
CSS0004609 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 1.1e-20 104.0 167 43.7
CSS0025565 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 1.9e-20 103.2 164 41.5
Ciclev10016512m.g Citrus clementina HOM05D003316 ORTHO05D003690 3.3e-20 102.4 171 40.9
Nn7g37833 Nelumbo nucifera HOM05D003316 ORTHO05D003690 4.3e-20 102.1 184 38.0
GSVIVG01038001001 Vitis vinifera HOM05D003316 ORTHO05D003690 7.3e-20 101.3 169 41.4
Rhsim06G0241400 Rhododendron simsii HOM05D003316 ORTHO05D003690 1.6e-19 100.1 168 43.5
Haze_07827 Corylus avellana HOM05D003316 ORTHO05D003690 2.1e-19 99.8 170 42.9
Lj1A910T5 Lonicera japonica HOM05D003316 ORTHO05D003690 2.1e-19 99.8 172 41.3
Thecc.06G134000 Theobroma cacao HOM05D003316 ORTHO05D003690 2.8e-19 99.4 170 41.2
MSTRG.7073 Avicennia marina HOM05D003316 ORTHO05D003690 4.7e-19 98.6 170 41.2
CiPaw.11G063000 Carya illinoinensis HOM05D003316 ORTHO05D003690 4.7e-19 98.6 171 43.3
Actinidia07371 Actinidia chinensis HOM05D003316 ORTHO05D003690 8.1e-19 97.8 164 43.3
GSVIVG01036804001 Vitis vinifera HOM05D003316 ORTHO05D003690 1.1e-18 97.4 163 41.1
TAR627G0616 Trochodendron aralioides HOM05D003316 ORTHO05D003690 1.8e-18 96.7 166 48.2
HanXRQChr11g0335691 Helianthus annuus HOM05D003316 ORTHO05D003690 2.4e-18 96.3 169 43.2
QL04p080199 Quercus lobata HOM05D003316 ORTHO05D003690 3.1e-18 95.9 170 42.4
Duzib192G0114 Durio zibethinus HOM05D003316 ORTHO05D003690 5.2e-18 95.1 173 41.6
vmacro11707 Vaccinium macrocarpon HOM05D003316 ORTHO05D003690 5.2e-18 95.1 167 41.3
Medtr2g066700 Medicago truncatula HOM05D003316 ORTHO05D003690 1.2e-17 94.0 181 39.8
Gohir.A13G122600 Gossypium hirsutum HOM05D003316 ORTHO05D003690 1.5e-17 93.6 172 41.9
TWI38G0778 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 1.5e-17 93.6 168 41.7
Cfa022970 Carpinus fangiana HOM05D003316 ORTHO05D003690 2.0e-17 93.2 170 43.5
Nitab4.5_0000747g0040 Nicotiana tabacum HOM05D003316 ORTHO05D003690 2.6e-17 92.8 169 38.5
Nitab4.5_0003929g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 2.6e-17 92.8 169 38.5
Cpa.g.c44098 Carica papaya HOM05D003316 ORTHO05D003690 3.4e-17 92.4 184 42.9
Duzib235G1001 Durio zibethinus HOM05D003316 ORTHO05D003690 3.4e-17 92.4 170 41.8
QL04p080015 Quercus lobata HOM05D003316 ORTHO05D003690 7.6e-17 91.3 170 40.6
Cc05_g16270 Coffea canephora HOM05D003316 ORTHO05D003690 9.9e-17 90.9 174 37.9
Cpa.g.sc136.61 Carica papaya HOM05D003316 ORTHO05D003690 1.3e-16 90.5 173 37.6
Actinidia35424 Actinidia chinensis HOM05D003316 ORTHO05D003690 1.7e-16 90.1 164 40.2
Gohir.D13G126700 Gossypium hirsutum HOM05D003316 ORTHO05D003690 2.2e-16 89.7 172 41.3
Lalb_Chr01g0007091 Lupinus albus HOM05D003316 ORTHO05D003690 2.2e-16 89.7 175 38.9
QL04p080175 Quercus lobata HOM05D003316 ORTHO05D003690 2.2e-16 89.7 170 41.2
MSTRG.16103 Avicennia marina HOM05D003316 ORTHO05D003690 3.8e-16 89.0 170 38.8
VMungo1080G0561 Vigna mungo HOM05D003316 ORTHO05D003690 4.9e-16 88.6 181 41.4
Duzib187G1768 Durio zibethinus HOM05D003316 ORTHO05D003690 6.4e-16 88.2 168 40.5
Phvul.005G051100 Phaseolus vulgaris HOM05D003316 ORTHO05D003690 6.4e-16 88.2 177 39.0
Gorai.013G141800 Gossypium raimondii HOM05D003316 ORTHO05D003690 1.1e-15 87.4 172 40.7
Peaxi162Scf00452g00411 Petunia axillaris HOM05D003316 ORTHO05D003690 1.1e-15 87.4 170 36.5
Prupe.4G136500 Prunus persica HOM05D003316 ORTHO05D003690 1.1e-15 87.4 175 40.6
ECA236G2699 Erigeron canadensis HOM05D003316 ORTHO05D003690 1.4e-15 87.0 183 38.8
TPR.G33853 Trifolium pratense HOM05D003316 ORTHO05D003690 1.4e-15 87.0 176 39.2
Lsat_1_v5_gn_7_110360 Lactuca sativa HOM05D003316 ORTHO05D003690 1.9e-15 86.7 177 40.1
COL.COLO4_07011 Corchorus olitorius HOM05D003316 ORTHO05D003690 2.4e-15 86.3 172 41.3
Hma1.2p1_0151F.1_g067420 Hydrangea macrophylla HOM05D003316 ORTHO05D003690 2.4e-15 86.3 170 40.6
Potri.007G067300 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.4e-15 86.3 170 38.8
SalBow8G1536 Salvia bowleyana HOM05D003316 ORTHO05D003690 2.4e-15 86.3 170 39.4
Duzib160G0233 Durio zibethinus HOM05D003316 ORTHO05D003690 4.2e-15 85.5 146 49.3
Lj3g0011134 Lotus japonicus HOM05D003316 ORTHO05D003690 7.1e-15 84.7 172 41.3
Psat1g005840 Pisum sativum HOM05D003316 ORTHO05D003690 7.1e-15 84.7 175 42.3
Migut.M01536 Erythranthe guttata HOM05D003316 ORTHO05D003690 9.2e-15 84.3 180 39.4
MSTRG.14558 Avicennia marina HOM05D003316 ORTHO05D003690 1.6e-14 83.6 171 42.1
ClCG09G022660 Citrullus lanatus HOM05D003316 ORTHO05D003690 2.1e-14 83.2 173 37.6
Duzib213G0545 Durio zibethinus HOM05D003316 ORTHO05D003690 2.1e-14 83.2 169 40.8
MD05G1223700 Malus domestica HOM05D003316 ORTHO05D003690 2.1e-14 83.2 173 37.0
Hund12435 Selenicereus undatus HOM05D003316 ORTHO05D003690 2.7e-14 82.8 182 36.8
Gohir.D01G081200 Gossypium hirsutum HOM05D003316 ORTHO05D003690 3.5e-14 82.4 166 41.0
COL.COLO4_30905 Corchorus olitorius HOM05D003316 ORTHO05D003690 4.6e-14 82.0 164 36.6
Glyma.15G259100 Glycine max HOM05D003316 ORTHO05D003690 4.6e-14 82.0 179 37.4
Lalb_Chr25g0284791 Lupinus albus HOM05D003316 ORTHO05D003690 4.6e-14 82.0 163 38.7
Sed0022394 Sechium edule HOM05D003316 ORTHO05D003690 4.6e-14 82.0 159 37.1
SGA_v2.0_scaffold239G44036 Striga asiatica HOM05D003316 ORTHO05D003690 4.6e-14 82.0 189 34.4
CARHR072810 Cardamine hirsuta HOM05D003316 ORTHO05D003690 6.0e-14 81.6 182 36.3
Lalb_Chr03g0031631 Lupinus albus HOM05D003316 ORTHO05D003690 6.0e-14 81.6 171 38.0
Ciclev10005652m.g Citrus clementina HOM05D003316 ORTHO05D003690 7.8e-14 81.3 192 36.5
Lalb_Chr01g0015851 Lupinus albus HOM05D003316 ORTHO05D003690 7.8e-14 81.3 176 36.9
MBI02_g21020_MAGBIO Magnolia biondii HOM05D003316 ORTHO05D003690 7.8e-14 81.3 183 34.4
SHI21400 Sapria himalayana HOM05D003316 ORTHO05D003690 7.8e-14 81.3 144 41.7
PGSC0003DMG400022120 Solanum tuberosum HOM05D003316 ORTHO05D003690 7.8e-14 81.3 161 37.3
Atru.chr1.123 Acer truncatum HOM05D003316 ORTHO05D003690 1.0e-13 80.9 192 34.4
MELO3C012614.2 Cucumis melo HOM05D003316 ORTHO05D003690 1.0e-13 80.9 173 38.7
Gorai.002G106100 Gossypium raimondii HOM05D003316 ORTHO05D003690 1.0e-13 80.9 167 41.3
MD10G1205200 Malus domestica HOM05D003316 ORTHO05D003690 1.0e-13 80.9 185 36.2
CsaV3_7G022850 Cucumis sativus L. HOM05D003316 ORTHO05D003690 1.7e-13 80.1 174 39.7
unitig_32.g11082 Utricularia gibba HOM05D003316 ORTHO05D003690 1.7e-13 80.1 154 39.6
Aa31LG4G1840 Aethionema arabicum HOM05D003316 ORTHO05D003690 2.3e-13 79.7 174 33.3
Eucgr.F01471 Eucalyptus grandis HOM05D003316 ORTHO05D003690 3.0e-13 79.3 171 39.8
Gohir.A01G096900 Gossypium hirsutum HOM05D003316 ORTHO05D003690 3.0e-13 79.3 166 40.4
TWI38G1355 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 3.0e-13 79.3 151 42.4
MSTRG.13075 Avicennia marina HOM05D003316 ORTHO05D003690 3.9e-13 79.0 168 39.3
CARHR016970 Cardamine hirsuta HOM05D003316 ORTHO05D003690 3.9e-13 79.0 175 36.0
arahy.Tifrunner.gnm1.ann1.Q78MS7 Arachis hypogaea HOM05D003316 ORTHO05D003690 6.6e-13 78.2 201 39.3
Manes.14G011100 Manihot esculenta HOM05D003316 ORTHO05D003690 6.6e-13 78.2 184 38.6
Thecc.07G169200 Theobroma cacao HOM05D003316 ORTHO05D003690 6.6e-13 78.2 175 39.4
EL10Ac8g18492 Beta vulgaris HOM05D003316 ORTHO05D003690 1.5e-12 77.0 193 34.2
Lalb_Chr19g0133361 Lupinus albus HOM05D003316 ORTHO05D003690 1.5e-12 77.0 140 38.6
Lalb_Chr20g0108611 Lupinus albus HOM05D003316 ORTHO05D003690 1.5e-12 77.0 147 38.8
Sed0001262 Sechium edule HOM05D003316 ORTHO05D003690 1.5e-12 77.0 179 36.9
Carub.0001s1625 Capsella rubella HOM05D003316 ORTHO05D003690 1.9e-12 76.6 178 36.0
unitig_37.g12202 Utricularia gibba HOM05D003316 ORTHO05D003690 1.9e-12 76.6 170 38.8
CDE06G2584 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.5e-12 76.3 172 38.4
Sp5g34220 Schrenkiella parvula HOM05D003316 ORTHO05D003690 2.5e-12 76.3 179 36.3
Manes.06G175000 Manihot esculenta HOM05D003316 ORTHO05D003690 3.3e-12 75.9 185 48.6
Solyc07g066570.4 Solanum lycopersicum HOM05D003316 ORTHO05D003690 3.3e-12 75.9 120 43.3
THA.LOC104813611 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 3.3e-12 75.9 177 36.7
CDE02G3419 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 4.3e-12 75.5 155 39.4
arahy.Tifrunner.gnm1.ann1.JV1AYU Arachis hypogaea HOM05D003316 ORTHO05D003690 5.6e-12 75.1 202 38.6
Potri.005G096800 Populus trichocarpa HOM05D003316 ORTHO05D003690 5.6e-12 75.1 171 39.8
AT1G79160 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 9.6e-12 74.3 176 33.5
Eucgr.F04447 Eucalyptus grandis HOM05D003316 ORTHO05D003690 9.6e-12 74.3 178 36.0
SGA_v2.0_scaffold49G18186 Striga asiatica HOM05D003316 ORTHO05D003690 9.6e-12 74.3 176 38.1
Carub.0002s2603 Capsella rubella HOM05D003316 ORTHO05D003690 1.6e-11 73.6 189 32.8
Sopen07g034730 Solanum pennellii HOM05D003316 ORTHO05D003690 1.6e-11 73.6 120 42.5
A09p60880 Brassica napus HOM05D003316 ORTHO05D003690 2.1e-11 73.2 183 33.3
BraA09t41461Z Brassica rapa HOM05D003316 ORTHO05D003690 2.1e-11 73.2 183 33.3
PGR031G2416 Punica granatum HOM05D003316 ORTHO05D003690 2.1e-11 73.2 183 33.9
Oeu051683.1 Olea europaea HOM05D003316 ORTHO05D003690 2.8e-11 72.8 168 40.5
Gohir.A10G048700 Gossypium hirsutum HOM05D003316 ORTHO05D003690 3.6e-11 72.4 185 40.5
Gohir.D10G049400 Gossypium hirsutum HOM05D003316 ORTHO05D003690 4.7e-11 72.0 167 42.5
Gorai.011G052900 Gossypium raimondii HOM05D003316 ORTHO05D003690 4.7e-11 72.0 187 40.1
AL2G39640 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 6.2e-11 71.6 178 34.8
BcaC05g25564 Brassica carinata HOM05D003316 ORTHO05D003690 8.1e-11 71.2 183 33.9
Sed0011738 Sechium edule HOM05D003316 ORTHO05D003690 8.1e-11 71.2 170 36.5
Atru.chr10.639 Acer truncatum HOM05D003316 ORTHO05D003690 1.1e-10 70.9 137 39.4
Aqoxy1G01502 Aquilegia oxysepala HOM05D003316 ORTHO05D003690 1.1e-10 70.9 126 50.0
Aqoxy1G01506 Aquilegia oxysepala HOM05D003316 ORTHO05D003690 1.1e-10 70.9 126 50.0
BraA06t24411Z Brassica rapa HOM05D003316 ORTHO05D003690 1.1e-10 70.9 182 34.1
FAN16G3516 Fragaria x ananassa HOM05D003316 ORTHO05D003690 1.1e-10 70.9 161 36.6
Migut.H01676 Erythranthe guttata HOM05D003316 ORTHO05D003690 1.4e-10 70.5 177 34.5
FvH4_3g15360 Fragaria vesca HOM05D003316 ORTHO05D003690 1.8e-10 70.1 178 35.4
ClCG02G018610 Citrullus lanatus HOM05D003316 ORTHO05D003690 2.4e-10 69.7 183 33.9
BolC8t51988H Brassica oleracea HOM05D003316 ORTHO05D003690 3.1e-10 69.3 182 31.9
CDE02G2536 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 3.1e-10 69.3 138 36.2
FAN11G0988 Fragaria x ananassa HOM05D003316 ORTHO05D003690 3.1e-10 69.3 161 36.6
Nitab4.5_0008429g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 3.1e-10 69.3 181 33.1
CsaV3_6G013590 Cucumis sativus L. HOM05D003316 ORTHO05D003690 4.0e-10 68.9 183 33.9
FAN21G3518 Fragaria x ananassa HOM05D003316 ORTHO05D003690 4.0e-10 68.9 161 36.0
FAN25G0335 Fragaria x ananassa HOM05D003316 ORTHO05D003690 4.0e-10 68.9 176 34.1
RcHm_v2.0_Chr5g0025801 Rosa chinensis HOM05D003316 ORTHO05D003690 4.0e-10 68.9 176 35.2
unitig_749.g13695 Utricularia gibba HOM05D003316 ORTHO05D003690 4.0e-10 68.9 168 35.1
THA.LOC104808128 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 5.2e-10 68.6 148 36.5
A06p12480 Brassica napus HOM05D003316 ORTHO05D003690 6.9e-10 68.2 182 33.5
ECA240G0877 Erigeron canadensis HOM05D003316 ORTHO05D003690 6.9e-10 68.2 128 39.1
Aa31LG7G1040 Aethionema arabicum HOM05D003316 ORTHO05D003690 9.0e-10 67.8 101 46.5
Sc09g0007620 Simmondsia chinensis HOM05D003316 ORTHO05D003690 9.0e-10 67.8 180 34.4
AL1G28660 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 1.2e-09 67.4 158 36.1
BcaB02g06634 Brassica carinata HOM05D003316 ORTHO05D003690 1.5e-09 67.0 155 34.8
MELO3C019643.2 Cucumis melo HOM05D003316 ORTHO05D003690 1.5e-09 67.0 183 33.3
AT1G16500 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 3.4e-09 65.9 132 39.4
BcaNung04897 Brassica carinata HOM05D003316 ORTHO05D003690 3.4e-09 65.9 170 31.8
BcaC08g47478 Brassica carinata HOM05D003316 ORTHO05D003690 4.4e-09 65.5 175 32.0
C06p53030 Brassica napus HOM05D003316 ORTHO05D003690 4.4e-09 65.5 175 32.0
C08p44470 Brassica napus HOM05D003316 ORTHO05D003690 4.4e-09 65.5 182 32.4
BolC6t40320H Brassica oleracea HOM05D003316 ORTHO05D003690 4.4e-09 65.5 173 31.2
BraA07t31937Z Brassica rapa HOM05D003316 ORTHO05D003690 4.4e-09 65.5 174 32.2
BcaC05g25563 Brassica carinata HOM05D003316 ORTHO05D003690 5.8e-09 65.1 182 33.0
A07p44280 Brassica napus HOM05D003316 ORTHO05D003690 7.6e-09 64.7 173 32.4
C05p14730 Brassica napus HOM05D003316 ORTHO05D003690 7.6e-09 64.7 182 32.4
BolC5t30193H Brassica oleracea HOM05D003316 ORTHO05D003690 7.6e-09 64.7 182 32.4
Sp1g14650 Schrenkiella parvula HOM05D003316 ORTHO05D003690 7.6e-09 64.7 153 37.9
HanXRQChr13g0409371 Helianthus annuus HOM05D003316 ORTHO05D003690 1.3e-08 63.9 141 34.8
Thhalv10008548m.g Eutrema salsugineum HOM05D003316 ORTHO05D003690 2.2e-08 63.2 156 37.2
BcaB02g08670 Brassica carinata HOM05D003316 ORTHO05D003690 2.9e-08 62.8 188 33.0
CSS0033846 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 2.9e-08 62.8 144 38.2
Phvul.011G172700 Phaseolus vulgaris HOM05D003316 ORTHO05D003690 2.9e-08 62.8 175 37.1
Sed0025744 Sechium edule HOM05D003316 ORTHO05D003690 2.9e-08 62.8 180 33.3
C06p30040 Brassica napus HOM05D003316 ORTHO05D003690 8.4e-08 61.2 173 33.5
BolC6t38165H Brassica oleracea HOM05D003316 ORTHO05D003690 8.4e-08 61.2 173 33.5
BcaC08g45373 Brassica carinata HOM05D003316 ORTHO05D003690 1.1e-07 60.8 171 33.9
Actinidia12775 Actinidia chinensis HOM05D003316 ORTHO05D003690 1.4e-07 60.5 105 44.8
unitig_578.g16328 Utricularia gibba HOM05D003316 ORTHO05D003690 1.4e-07 60.5 141 41.8
Lj3g0011998 Lotus japonicus HOM05D003316 ORTHO05D003690 4.2e-07 58.9 176 33.5
Actinidia37126 Actinidia chinensis HOM05D003316 ORTHO05D003690 5.4e-07 58.5 95 46.3
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 5.4e-07 58.5 113 34.5
Nitab4.5_0000611g0030 Nicotiana tabacum HOM05D003316 ORTHO05D003690 5.4e-07 58.5 172 33.7
ATR0763G052 Amborella trichopoda HOM05D003316 ORTHO05D003690 1.6e-06 57.0 170 31.8
CANSAT80G0009 Cannabis sativa HOM05D003316 ORTHO05D003690 1.6e-06 57.0 119 42.0
HPP92_004183 Vanilla planifolia HOM05D003316 ORTHO05D003690 1.6e-06 57.0 138 35.5
CAN.G492.73 Capsicum annuum HOM05D003316 ORTHO05D003690 2.7e-06 56.2 141 44.7
CDE01G0250 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 3.5e-06 55.8 112 30.4
CDE12G0925 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 3.5e-06 55.8 163 30.1
Sc06g0002770 Simmondsia chinensis HOM05D003316 ORTHO05D003690 3.5e-06 55.8 182 29.1
unitig_8.g4755 Utricularia gibba HOM05D003316 ORTHO05D003690 7.8e-06 54.7 179 36.9


User provided reference genes

Program Settings