Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 5.7e-217 757.3 379 100.0
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 5.4e-167 591.3 379 76.3
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 6.6e-165 584.3 376 75.8
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.6e-163 579.7 379 73.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.8e-163 578.9 379 74.7
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.4e-162 576.6 378 74.3
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.4e-162 576.6 377 74.3
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 3.1e-162 575.5 361 77.6
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 7.5e-161 570.9 376 73.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 9.8e-161 570.5 377 73.5
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.7e-160 569.7 376 74.2
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 4.9e-160 568.2 376 75.0
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 3.2e-159 565.5 429 67.1
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 7.0e-159 564.3 377 72.1
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 6.0e-158 561.2 379 72.3
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.0e-157 558.9 380 70.5
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 3.9e-157 558.5 375 72.3
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 3.9e-157 558.5 375 73.6
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 8.6e-157 557.4 376 72.9
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 5.6e-156 554.7 377 71.9
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 9.5e-156 553.9 377 71.4
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.2e-155 553.5 379 70.4
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.2e-155 553.5 379 70.7
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.1e-155 552.7 377 71.9
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 2.1e-155 552.7 375 71.7
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 4.7e-155 551.6 377 70.8
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.8e-154 549.7 377 71.4
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 4.0e-154 548.5 379 70.4
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 5.2e-154 548.1 375 72.3
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 6.8e-154 547.7 375 70.4
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.5e-153 546.6 379 71.5
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 1.7e-152 543.1 379 69.1
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 2.2e-152 542.7 376 71.5
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 3.7e-152 542.0 379 68.1
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.1e-151 540.4 375 70.1
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.4e-151 540.0 375 70.1
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 4.1e-151 538.5 379 68.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.1e-150 536.2 375 69.6
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.1e-150 536.2 375 69.6
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.7e-149 533.1 379 68.1
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 1.4e-146 523.5 380 67.1
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 3.1e-146 522.3 379 65.4
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.8e-146 521.2 385 66.8
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.2e-145 520.4 376 68.4
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 4.4e-145 518.5 377 67.1
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 4.4e-145 518.5 379 66.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 5.8e-145 518.1 380 65.8
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 7.6e-145 517.7 377 66.8
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.7e-144 516.5 375 64.5
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 3.8e-144 515.4 375 64.5
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.9e-143 513.1 377 66.6
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 3.2e-143 512.3 377 67.1
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 5.4e-143 511.5 375 66.9
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 2.7e-142 509.2 377 66.0
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 3.5e-142 508.8 380 64.7
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.0e-141 507.3 380 64.7
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.0e-141 507.3 375 66.1
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 8.6e-141 504.2 381 65.1
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 3.3e-140 502.3 380 64.5
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 4.3e-140 501.9 365 69.6
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 2.1e-139 499.6 377 64.5
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.1e-138 497.3 377 64.5
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.4e-138 496.9 377 64.7
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 2.4e-138 496.1 406 62.1
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 2.4e-138 496.1 380 63.9
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 6.9e-138 494.6 379 62.3
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 4.4e-137 491.9 377 65.0
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 7.6e-137 491.1 376 62.0
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 9.9e-137 490.7 382 62.0
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.3e-136 490.3 379 62.5
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 6.4e-136 488.0 377 61.0
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 6.4e-136 488.0 379 62.0
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 4.2e-135 485.3 379 61.7
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 7.1e-135 484.6 380 60.8
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.6e-134 483.4 380 61.1
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 3.5e-134 482.3 380 60.8
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 3.5e-134 482.3 380 61.6
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 3.5e-134 482.3 380 60.8
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 3.5e-134 482.3 379 61.5
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 4.6e-134 481.9 380 60.5
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.3e-133 480.3 381 61.7
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.1e-132 477.2 379 62.0
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 2.0e-129 466.5 400 59.2
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 5.8e-129 464.9 375 61.3
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 4.9e-128 461.8 379 60.7
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.0e-125 454.1 375 57.6
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.3e-125 453.0 377 61.3
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.9e-124 449.9 379 59.9
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 3.3e-124 449.1 424 53.3
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.1e-122 444.1 383 58.0
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.1e-119 434.1 371 56.3
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 9.6e-116 421.0 316 64.6
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 2.8e-107 392.9 272 70.2
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 3.4e-105 386.0 377 46.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 1.7e-104 383.6 267 67.8
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 4.6e-102 375.6 372 50.3
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 2.2e-96 356.7 408 49.3
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 1.1e-92 344.4 277 62.5
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 7.0e-82 308.5 364 42.3
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.0e-81 307.0 191 72.8
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 8.8e-77 291.6 264 58.0
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.4e-74 284.3 380 38.2
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.9e-48 196.4 168 59.5
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 6.8e-45 185.7 135 70.4
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 4.4e-44 183.0 223 45.7
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 4.4e-44 183.0 223 45.7
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 7.5e-44 182.2 139 61.9
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.3e-43 181.4 163 54.0
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.4e-42 177.9 124 68.5
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.4e-42 177.9 124 65.3
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 5.6e-39 166.0 112 63.4
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 3.9e-32 143.3 381 31.5
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 5.6e-31 139.4 379 30.1
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 5.6e-31 139.4 115 59.1
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 4.6e-25 119.8 110 58.2
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 6.6e-24 115.9 351 25.9
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 4.2e-18 96.7 82 63.4
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 3.6e-14 83.6 51 78.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 4.0e-13 80.1 52 75.0
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 9.0e-13 79.0 73 58.9
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 2.0e-12 77.8 58 62.1
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 1.7e-11 74.7 130 42.3
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 3.8e-11 73.6 119 41.2
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.2e-09 68.6 45 71.1
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.6e-09 68.2 92 43.5
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 2.1e-09 67.8 51 58.8
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.3e-08 65.1 45 66.7
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 2.3e-08 64.3 47 61.7
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.5e-07 61.6 53 60.4
Migut.F00246 Erythranthe guttata HOM05D002314 ORTHO05D002538 5.6e-07 59.7 378 27.8
Thecc.06G090000 Theobroma cacao HOM05D001142 ORTHO05D004628 5.6e-07 59.7 275 26.5
Thecc.01G027000 Theobroma cacao HOM05D001367 ORTHO05D005289 7.4e-07 59.3 312 23.7
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 9.6e-07 58.9 58 50.0
MSTRG.11069 Avicennia marina HOM05D001142 ORTHO05D004628 1.3e-06 58.5 376 22.1
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 1.3e-06 58.5 299 23.7
CAN.G2846.2 Capsicum annuum HOM05D005972 ORTHO05D007548 2.1e-06 57.8 49 59.2
TWI14G1422 Tripterygium wilfordii HOM05D002314 ORTHO05D002538 4.8e-06 56.6 348 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 8.1e-06 55.8 286 22.4
Ca_20384_v3 Cicer arietinum L. HOM05D001142 ORTHO05D004628 8.1e-06 55.8 327 22.3
Gohir.D10G091500 Gossypium hirsutum HOM05D001367 ORTHO05D005289 8.1e-06 55.8 299 24.1


User provided reference genes

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