Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G059200 Manihot esculenta HOM05D007400 ORTHO05D009351 2.5e-150 535.4 273 100.0
Potri.012G119800 Populus trichocarpa HOM05D007400 ORTHO05D009351 2.8e-72 276.2 272 57.4
Cfa000725 Carpinus fangiana HOM05D007400 ORTHO05D009351 1.1e-68 264.2 251 58.2
MD00G1111500 Malus domestica HOM05D007400 ORTHO05D009351 4.1e-68 262.3 280 54.3
CiPaw.10G065400 Carya illinoinensis HOM05D007400 ORTHO05D009351 5.4e-68 261.9 242 62.4
Actinidia11209 Actinidia chinensis HOM05D007400 ORTHO05D009351 1.6e-67 260.4 265 56.2
GSVIVG01012101001 Vitis vinifera HOM05D007400 ORTHO05D009351 2.0e-67 260.0 225 62.7
TWI63G0941 Tripterygium wilfordii HOM05D007400 ORTHO05D009351 2.7e-67 259.6 278 54.3
Duzib192G0901 Durio zibethinus HOM05D007400 ORTHO05D009351 6.0e-67 258.5 284 53.5
FvH4_4g09390 Fragaria vesca HOM05D007400 ORTHO05D009351 7.8e-67 258.1 245 58.0
PGR042G1002 Punica granatum HOM05D007400 ORTHO05D009351 1.0e-66 257.7 266 57.9
CANSAT11G1633 Cannabis sativa HOM05D007400 ORTHO05D009351 1.3e-66 257.3 256 58.2
Carub.0007s2138 Capsella rubella HOM05D007400 ORTHO05D009351 3.0e-66 256.1 248 55.6
Sopen02g018260 Solanum pennellii HOM05D007400 ORTHO05D009351 3.0e-66 256.1 260 55.4
RcHm_v2.0_Chr4g0402661 Rosa chinensis HOM05D007400 ORTHO05D009351 3.9e-66 255.8 254 55.1
FAN22G1838 Fragaria x ananassa HOM05D007400 ORTHO05D009351 8.6e-66 254.6 248 57.3
Lj5g0000759 Lotus japonicus HOM05D007400 ORTHO05D009351 1.1e-65 254.2 271 56.5
Hma1.2p1_0040F.1_g025040 Hydrangea macrophylla HOM05D007400 ORTHO05D009351 1.9e-65 253.4 250 59.6
Peaxi162Scf00149g01015 Petunia axillaris HOM05D007400 ORTHO05D009351 1.9e-65 253.4 252 57.9
Solyc02g069130.3 Solanum lycopersicum HOM05D007400 ORTHO05D009351 1.9e-65 253.4 257 56.0
CAN.G1222.5 Capsicum annuum HOM05D007400 ORTHO05D009351 2.5e-65 253.1 253 56.9
vmacro11006 Vaccinium macrocarpon HOM05D007400 ORTHO05D009351 2.5e-65 253.1 266 56.0
Atru.chr10.612 Acer truncatum HOM05D007400 ORTHO05D009351 3.3e-65 252.7 239 59.0
Ciclev10016614m.g Citrus clementina HOM05D007400 ORTHO05D009351 3.3e-65 252.7 201 66.2
AT4G19830 Arabidopsis thaliana HOM05D007400 ORTHO05D009351 5.6e-65 251.9 226 58.4
Lj2A352T41 Lonicera japonica HOM05D007400 ORTHO05D009351 5.6e-65 251.9 257 57.6
Medtr1g061080 Medicago truncatula HOM05D007400 ORTHO05D009351 5.6e-65 251.9 274 53.3
BolC3t20518H Brassica oleracea HOM05D007400 ORTHO05D009351 7.3e-65 251.5 271 52.4
Nn7g38084 Nelumbo nucifera HOM05D007400 ORTHO05D009351 7.3e-65 251.5 237 60.8
BcaC01g00636 Brassica carinata HOM05D007400 ORTHO05D009351 9.5e-65 251.1 267 52.8
CARHR226600 Cardamine hirsuta HOM05D007400 ORTHO05D009351 1.2e-64 250.8 248 55.2
Cc09_g06320 Coffea canephora HOM05D007400 ORTHO05D009351 1.6e-64 250.4 248 57.3
HanXRQChr15g0487331 Helianthus annuus HOM05D007400 ORTHO05D009351 1.6e-64 250.4 274 53.6
C03p82350 Brassica napus HOM05D007400 ORTHO05D009351 2.1e-64 250.0 271 51.7
TAR626G1335 Trochodendron aralioides HOM05D007400 ORTHO05D009351 2.1e-64 250.0 278 54.0
A08p14510 Brassica napus HOM05D007400 ORTHO05D009351 3.6e-64 249.2 271 52.0
BraA08t33439Z Brassica rapa HOM05D007400 ORTHO05D009351 3.6e-64 249.2 271 52.0
Gorai.009G151100 Gossypium raimondii HOM05D007400 ORTHO05D009351 3.6e-64 249.2 222 60.8
ClCG01G009370 Citrullus lanatus HOM05D007400 ORTHO05D009351 4.7e-64 248.8 258 55.0
Gohir.A05G144700 Gossypium hirsutum HOM05D007400 ORTHO05D009351 6.2e-64 248.4 219 61.6
Lsat_1_v5_gn_8_117760 Lactuca sativa HOM05D007400 ORTHO05D009351 6.2e-64 248.4 283 51.2
Eucgr.E01894 Eucalyptus grandis HOM05D007400 ORTHO05D009351 8.0e-64 248.1 272 54.0
Gohir.D05G147100 Gossypium hirsutum HOM05D007400 ORTHO05D009351 8.0e-64 248.1 222 60.4
Oeu050064.1 Olea europaea HOM05D007400 ORTHO05D009351 1.1e-63 247.7 240 57.9
TPR.G5680 Trifolium pratense HOM05D007400 ORTHO05D009351 1.1e-63 247.7 236 58.9
BcaB03g11643 Brassica carinata HOM05D007400 ORTHO05D009351 3.1e-63 246.1 271 52.4
CDE05G1756 Ceratophyllum demersum HOM05D007400 ORTHO05D009351 4.0e-63 245.7 224 58.5
CsaV3_1G046550 Cucumis sativus L. HOM05D007400 ORTHO05D009351 4.0e-63 245.7 258 54.3
Thhalv10026156m.g Eutrema salsugineum HOM05D007400 ORTHO05D009351 4.0e-63 245.7 227 58.6
Glyma.10G066600 Glycine max HOM05D007400 ORTHO05D009351 5.2e-63 245.4 256 55.9
PSO675G6700 Papaver somniferum HOM05D007400 ORTHO05D009351 5.2e-63 245.4 254 55.9
Sed0027636 Sechium edule HOM05D007400 ORTHO05D009351 5.2e-63 245.4 250 56.0
Migut.L00012 Erythranthe guttata HOM05D007400 ORTHO05D009351 8.9e-63 244.6 275 52.4
Zm00001eb207360 Zea mays HOM05D007400 ORTHO05D009351 1.2e-62 244.2 210 61.0
arahy.Tifrunner.gnm1.ann1.L1RKW0 Arachis hypogaea HOM05D007400 ORTHO05D009351 1.5e-62 243.8 270 54.8
AUR62011827 Chenopodium quinoa HOM05D007400 ORTHO05D009351 1.5e-62 243.8 228 57.9
DCAR_003791 Daucus carota HOM05D007400 ORTHO05D009351 1.5e-62 243.8 250 56.4
Os02g0168700 Oryza sativa ssp. japonica HOM05D007400 ORTHO05D009351 1.5e-62 243.8 259 53.3
THA.LOC104811504 Tarenaya hassleriana HOM05D007400 ORTHO05D009351 2.0e-62 243.4 222 59.0
arahy.Tifrunner.gnm1.ann1.ARB9WH Arachis hypogaea HOM05D007400 ORTHO05D009351 2.6e-62 243.0 270 54.4
Cpa.g.sc135.34 Carica papaya HOM05D007400 ORTHO05D009351 3.4e-62 242.7 227 59.5
Lalb_Chr09g0328751 Lupinus albus HOM05D007400 ORTHO05D009351 3.4e-62 242.7 248 55.6
Sp7g18330 Schrenkiella parvula HOM05D007400 ORTHO05D009351 9.8e-62 241.1 245 55.1
Aa31LG6G2310 Aethionema arabicum HOM05D007400 ORTHO05D009351 2.2e-61 240.0 234 55.6
Phvul.007G223000 Phaseolus vulgaris HOM05D007400 ORTHO05D009351 2.2e-61 240.0 251 54.6
ATR0763G247 Amborella trichopoda HOM05D007400 ORTHO05D009351 2.9e-61 239.6 212 61.3
Haze_06019 Corylus avellana HOM05D007400 ORTHO05D009351 1.1e-60 237.7 270 52.2
ECA232G4176 Erigeron canadensis HOM05D007400 ORTHO05D009351 2.4e-60 236.5 283 50.2
VMungo0720G1846 Vigna mungo HOM05D007400 ORTHO05D009351 3.2e-60 236.1 244 56.1
MELO3C021776.2 Cucumis melo HOM05D007400 ORTHO05D009351 1.2e-59 234.2 270 51.9
unitig_61.g26077 Utricularia gibba HOM05D007400 ORTHO05D009351 2.5e-57 226.5 238 54.2
Ca_11627_v3 Cicer arietinum L. HOM05D007400 ORTHO05D009351 9.5e-57 224.6 237 54.9
Cc11_g00930 Coffea canephora HOM05D007400 ORTHO05D009351 2.8e-56 223.0 251 53.0
Mapoly0025s0105 Marchantia polymorpha HOM05D007400 ORTHO05D009351 4.9e-53 212.2 207 52.7
QL11p018093 Quercus lobata HOM05D007400 ORTHO05D009351 6.4e-53 211.8 291 45.0
CSS0044125 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 3.2e-52 209.5 220 55.5
SMO270G0023 Selaginella moellendorffii HOM05D007400 ORTHO05D009351 5.4e-52 208.8 198 53.5
MBI09_g28984_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 4.6e-51 205.7 263 47.5
Pp3c2_2300 Physcomitrium patens HOM05D007400 ORTHO05D009351 7.8e-51 204.9 202 54.0
Thecc.06G140800 Theobroma cacao HOM05D007400 ORTHO05D009351 1.0e-50 204.5 175 62.9
CSS0009058 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 1.3e-50 204.1 175 62.9
Rhsim02G0169200 Rhododendron simsii HOM05D007400 ORTHO05D009351 2.3e-50 203.4 330 41.8
CSS0000937 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 5.1e-50 202.2 175 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2066 Anthoceros agrestis HOM05D003486 ORTHO05D004600 3.3e-49 199.5 218 49.1
Nitab4.5_0017218g0010 Nicotiana tabacum HOM05D007400 ORTHO05D009351 5.6e-49 198.7 168 61.9
Sc05g0000500 Simmondsia chinensis HOM05D007400 ORTHO05D009351 2.9e-45 186.4 169 57.4
CSS0019726 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 3.8e-45 186.0 198 55.1
Dinv04112 Davidia involucrata HOM05D007400 ORTHO05D009351 1.1e-44 184.5 240 47.1
MBI09_g37060_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 1.4e-44 184.1 217 50.2
Sabra12G0089100 Salix brachista HOM05D007400 ORTHO05D009351 3.2e-44 183.0 262 44.3
Prupe.1G087100 Prunus persica HOM05D007400 ORTHO05D009351 5.4e-44 182.2 235 48.5
FAN12G2033 Fragaria x ananassa HOM05D007400 ORTHO05D009351 7.1e-44 181.8 207 50.7
COL.COLO4_30978 Corchorus olitorius HOM05D000065 ORTHO05D001606 1.6e-43 180.6 249 45.0
PSO675G3258 Papaver somniferum HOM05D007400 ORTHO05D009351 2.1e-43 180.3 182 56.6
Psat6g078400 Pisum sativum HOM05D007400 ORTHO05D009351 3.0e-42 176.4 203 50.7
AL7G34250 Arabidopsis lyrata HOM05D007400 ORTHO05D009351 3.3e-41 172.9 187 49.7
SGA_v2.0_scaffold341G49377 Striga asiatica HOM05D007400 ORTHO05D009351 9.9e-38 161.4 252 44.4
EL10As5g23512 Beta vulgaris HOM05D007400 ORTHO05D009351 2.3e-34 150.2 240 42.1
MBI08_g39084_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 8.7e-34 148.3 229 42.8
AUR62024671 Chenopodium quinoa HOM05D007400 ORTHO05D009351 1.5e-33 147.5 233 41.6
Migut.C00263 Erythranthe guttata HOM05D007400 ORTHO05D009351 1.9e-33 147.1 93 81.7
Ah.02g112190 Amaranthus hybridus HOM05D007400 ORTHO05D009351 1.6e-32 144.1 77 88.3
Nitab4.5_0002056g0010 Nicotiana tabacum HOM05D007400 ORTHO05D009351 1.4e-31 141.0 119 63.0
Thecc.06G140000 Theobroma cacao HOM05D007400 ORTHO05D009351 1.9e-28 130.6 122 57.4
Ah.02g112200 Amaranthus hybridus HOM05D007400 ORTHO05D009351 2.4e-28 130.2 68 82.4
AL7G34270 Arabidopsis lyrata HOM05D000741 ORTHO05D000506 3.7e-16 89.7 110 50.0
MBI03_g31611_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 3.0e-10 70.1 38 86.8
TPR.G13582 Trifolium pratense HOM05D000003 ORTHO05D002335 4.1e-07 59.7 46 69.6
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 4.5e-06 56.2 266 26.7
FAN25G0358 Fragaria x ananassa HOM05D007127 ORTHO05D008803 5.9e-06 55.8 82 37.8
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 1.0e-05 55.1 79 41.8
RcHm_v2.0_Chr5g0075491 Rosa chinensis HOM05D007127 ORTHO05D008803 1.0e-05 55.1 85 36.5
RcHm_v2.0_Chr5g0075531 Rosa chinensis HOM05D007127 ORTHO05D008803 1.0e-05 55.1 85 36.5


User provided reference genes

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