Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G058078 Manihot esculenta HOM05D005210 ORTHO05D010286 1.6e-45 185.7 89 100.0
Lsat_1_v5_gn_2_41741 Lactuca sativa HOM05D005210 ORTHO05D010286 1.5e-30 136.0 84 83.3
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 1.5e-30 136.0 84 83.3
Lsat_1_v5_gn_6_2961 Lactuca sativa HOM05D005210 ORTHO05D010286 1.5e-30 136.0 84 83.3
Lsat_1_v5_gn_5_16401 Lactuca sativa HOM05D005210 ORTHO05D010286 2.7e-29 131.7 85 78.8
BraSC48t46322Z Brassica rapa HOM05D005210 ORTHO05D010286 3.6e-29 131.3 83 81.9
FAN17G0417 Fragaria x ananassa HOM05D005210 ORTHO05D010286 1.6e-21 105.9 73 76.7
EL10Ac6g14456 Beta vulgaris HOM05D005210 ORTHO05D010286 1.0e-20 103.2 57 89.5
AUR62042343 Chenopodium quinoa HOM05D005210 ORTHO05D010286 1.0e-20 103.2 57 89.5
AUR62043906 Chenopodium quinoa HOM05D005210 ORTHO05D010286 1.0e-20 103.2 57 89.5
RcHm_v2.0_Chr7g0235961 Rosa chinensis HOM05D005210 ORTHO05D010286 2.3e-20 102.1 58 87.9
RcHm_v2.0_MTg0499091 Rosa chinensis HOM05D005210 ORTHO05D010286 2.3e-20 102.1 58 87.9
ClCG09G013030 Citrullus lanatus HOM05D005210 ORTHO05D010286 5.2e-20 100.9 62 80.6
Hma1.2p1_0066F.1_g036150 Hydrangea macrophylla HOM05D005210 ORTHO05D010286 1.5e-19 99.4 56 87.5
ATMG00660 Arabidopsis thaliana HOM05D005210 ORTHO05D010286 2.0e-19 99.0 69 75.4
CARHR283020 Cardamine hirsuta HOM05D005210 ORTHO05D010286 2.0e-19 99.0 56 87.5
HanXRQMTg0579401 Helianthus annuus HOM05D005210 ORTHO05D010286 2.0e-19 99.0 57 86.0
SalBow1G3053 Salvia bowleyana HOM05D005210 ORTHO05D010286 3.4e-19 98.2 57 86.0
HanXRQChr14g0460771 Helianthus annuus HOM05D005210 ORTHO05D010286 5.7e-19 97.4 57 84.2
Lj2P1229T95 Lonicera japonica HOM05D005210 ORTHO05D010286 1.3e-18 96.3 56 85.7
Solyc00g025290.1 Solanum lycopersicum HOM05D005210 ORTHO05D010286 4.1e-17 91.3 57 78.9
PGSC0003DMG400041193 Solanum tuberosum HOM05D005210 ORTHO05D010286 4.1e-17 91.3 57 78.9
Ah.10g028400 Amaranthus hybridus HOM05D005210 ORTHO05D010286 5.4e-17 90.9 64 75.0
Nitab4.5_0009709g0010 Nicotiana tabacum HOM05D005210 ORTHO05D010286 1.2e-16 89.7 63 69.8
LjContig00439g0018526 Lotus japonicus HOM05D005210 ORTHO05D010286 4.5e-16 87.8 76 64.5
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 7.7e-16 87.0 44 93.2
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 1.3e-15 86.3 47 85.1
CAN.G1.5 Capsicum annuum HOM05D005210 ORTHO05D010286 3.8e-15 84.7 56 75.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.0e-12 76.6 44 84.1
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 1.8e-12 75.9 40 90.0
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.8e-12 75.9 49 71.4
MELO3C030616.2 Cucumis melo HOM05D005210 ORTHO05D010286 3.0e-12 75.1 44 81.8
CAN.G960.18 Capsicum annuum HOM05D008814 ORTHO05D010812 4.4e-11 71.2 34 94.1
GSVIVG01005452001 Vitis vinifera HOM05D008814 ORTHO05D010812 4.4e-11 71.2 34 94.1
COL.COLO4_04435 Corchorus olitorius HOM05D018954 ORTHO05D010812 2.8e-10 68.6 32 96.9
COL.COLO4_04461 Corchorus olitorius HOM05D018954 ORTHO05D010812 2.8e-10 68.6 32 96.9
COL.COLO4_04488 Corchorus olitorius HOM05D018954 ORTHO05D010812 2.8e-10 68.6 32 96.9
Solyc08g036535.1 Solanum lycopersicum HOM05D018954 ORTHO05D010812 2.8e-10 68.6 75 53.3
Peaxi162Scf00489g00022 Petunia axillaris HOM05D005210 ORTHO05D011782 3.7e-10 68.2 39 82.1
SHI29301 Sapria himalayana HOM05D008814 ORTHO05D010812 4.9e-10 67.8 34 88.2
SabraMtG0001200 Salix brachista HOM05D005210 ORTHO05D010286 6.3e-10 67.4 37 86.5
Solyc00g500343.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 8.3e-10 67.0 34 91.2
Solyc08g036500.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 8.3e-10 67.0 34 91.2
CAN.G1109.2 Capsicum annuum HOM05D008814 ORTHO05D010812 1.1e-09 66.6 34 88.2
Nitab4.5_0000172g1910 Nicotiana tabacum HOM05D008814 ORTHO05D010812 1.1e-09 66.6 34 85.3
CAN.G1.21 Capsicum annuum HOM05D008814 ORTHO05D010812 1.4e-09 66.2 33 90.9
PGSC0003DMG400033609 Solanum tuberosum HOM05D008814 ORTHO05D010812 1.4e-09 66.2 34 91.2
ECA039G0011 Erigeron canadensis HOM05D005210 ORTHO05D010286 3.1e-09 65.1 30 96.7
Lsat_1_v5_gn_0_34981 Lactuca sativa HOM05D005210 ORTHO05D010286 3.1e-09 65.1 30 96.7
SHI04841 Sapria himalayana HOM05D008814 ORTHO05D010812 7.8e-08 60.5 33 84.8
BcaC02g09031 Brassica carinata HOM05D008814 ORTHO05D010812 1.0e-07 60.1 40 75.0
Phvul.011G104800 Phaseolus vulgaris HOM05D005210 ORTHO05D010286 1.3e-07 59.7 35 80.0
Nn117s43415 Nelumbo nucifera HOM05D008814 ORTHO05D010812 6.6e-07 57.4 27 92.6
Nn1g10110 Nelumbo nucifera HOM05D008814 ORTHO05D010812 6.6e-07 57.4 27 92.6
Nn1g10192 Nelumbo nucifera HOM05D008814 ORTHO05D010812 6.6e-07 57.4 27 92.6
Sopen05g009620 Solanum pennellii HOM05D008814 ORTHO05D010812 8.6e-07 57.0 44 65.9
BcaC02g09030 Brassica carinata HOM05D008814 ORTHO05D010812 1.9e-06 55.8 40 72.5
A04p09340 Brassica napus HOM05D008814 ORTHO05D010812 1.9e-06 55.8 40 72.5
BolSC28t60310H Brassica oleracea HOM05D008814 ORTHO05D010812 1.9e-06 55.8 40 72.5
BolSC28t60366H Brassica oleracea HOM05D008814 ORTHO05D010812 1.9e-06 55.8 40 72.5
BraSC48t46234Z Brassica rapa HOM05D008814 ORTHO05D010812 1.9e-06 55.8 40 72.5
C01p34890 Brassica napus HOM05D008814 ORTHO05D010812 3.3e-06 55.1 30 83.3
CsaV3_7G023800 Cucumis sativus L. HOM05D008814 ORTHO05D010812 3.3e-06 55.1 26 96.2
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 5.6e-06 54.3 40 70.0


User provided reference genes

Program Settings