Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 3.6e-67 258.1 127 100.0
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.4e-58 229.6 127 88.2
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.3e-56 223.0 127 86.6
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 5.4e-55 217.6 129 83.7
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 3.5e-54 214.9 122 86.9
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 3.5e-54 214.9 127 85.8
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 4.3e-52 208.0 127 81.1
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 8.1e-51 203.8 127 80.3
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 1.1e-50 203.4 126 80.2
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 1.4e-50 203.0 130 78.5
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 1.8e-50 202.6 128 78.9
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 6.9e-50 200.7 130 78.5
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 9.0e-50 200.3 127 79.5
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 1.5e-49 199.5 127 76.4
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 2.0e-49 199.1 127 77.2
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 4.4e-49 198.0 129 78.3
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 4.4e-49 198.0 129 78.3
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 7.6e-49 197.2 128 78.1
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 9.9e-49 196.8 127 78.0
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 9.9e-49 196.8 131 76.3
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 2.2e-48 195.7 129 77.5
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 2.9e-48 195.3 135 74.8
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 2.9e-48 195.3 129 79.1
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 3.8e-48 194.9 130 76.9
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 3.8e-48 194.9 132 76.5
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 3.8e-48 194.9 128 78.9
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 6.4e-48 194.1 127 77.2
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 6.4e-48 194.1 130 76.9
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 6.4e-48 194.1 129 77.5
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 1.1e-47 193.4 127 74.8
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 1.9e-47 192.6 130 76.2
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 2.4e-47 192.2 127 74.0
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 2.4e-47 192.2 127 74.8
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 2.4e-47 192.2 130 76.9
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 2.4e-47 192.2 130 75.4
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 3.2e-47 191.8 130 76.2
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 7.1e-47 190.7 127 73.2
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 7.1e-47 190.7 130 76.2
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 9.3e-47 190.3 131 74.0
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 1.2e-46 189.9 122 79.5
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 1.2e-46 189.9 127 77.2
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 1.6e-46 189.5 122 76.2
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 2.7e-46 188.7 129 74.4
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 2.7e-46 188.7 125 77.6
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 3.5e-46 188.3 129 75.2
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.5e-46 188.3 122 77.9
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 3.5e-46 188.3 128 74.2
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 3.5e-46 188.3 127 74.0
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 4.6e-46 188.0 131 72.5
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 4.6e-46 188.0 109 81.7
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 7.8e-46 187.2 123 75.6
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 7.8e-46 187.2 125 77.6
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.7e-45 186.0 130 73.8
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 2.3e-45 185.7 122 77.0
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 2.3e-45 185.7 118 78.8
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 3.9e-45 184.9 124 76.6
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 5.1e-45 184.5 129 74.4
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 5.1e-45 184.5 122 77.9
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 5.1e-45 184.5 131 69.5
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 6.6e-45 184.1 131 74.8
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 1.5e-44 183.0 130 73.1
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 1.5e-44 183.0 128 71.9
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 1.6e-43 179.5 117 75.2
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 8.1e-43 177.2 129 71.3
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 1.1e-42 176.8 133 68.4
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.4e-42 176.4 125 72.0
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 1.4e-42 176.4 124 71.8
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 1.4e-42 176.4 124 71.8
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 1.8e-42 176.0 129 69.8
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 2.4e-42 175.6 125 72.0
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 5.3e-42 174.5 122 74.6
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 5.3e-42 174.5 99 85.9
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 6.9e-42 174.1 95 84.2
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 3.4e-41 171.8 93 86.0
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 7.6e-41 170.6 100 83.0
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 1.3e-40 169.9 107 74.8
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 1.7e-40 169.5 117 74.4
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 2.9e-40 168.7 122 69.7
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 5.4e-39 164.5 138 65.2
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 5.4e-39 164.5 127 68.5
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 7.1e-39 164.1 89 88.8
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 7.1e-39 164.1 124 67.7
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 3.3e-36 155.2 90 77.8
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 8.1e-35 150.6 85 77.6
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 1.4e-31 139.8 174 49.4
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 6.0e-30 134.4 85 75.3
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 7.9e-30 134.0 90 71.1
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 8.7e-29 130.6 94 68.1
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 9.6e-28 127.1 91 74.7
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 8.2e-27 124.0 96 70.8
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 3.1e-26 122.1 80 76.2
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 4.0e-26 121.7 80 76.2
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 6.9e-26 120.9 85 71.8
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 2.0e-25 119.4 129 55.8
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 1.7e-24 116.3 91 69.2
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 6.5e-24 114.4 79 77.2
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 5.1e-21 104.8 82 68.3
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 4.3e-20 101.7 98 60.2
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 5.7e-20 101.3 95 58.9
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 1.4e-18 96.7 85 60.0
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 9.0e-18 94.0 84 65.5
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 5.0e-16 88.2 55 80.0
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 8.5e-16 87.4 85 56.5
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 3.2e-15 85.5 41 87.8
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 4.2e-15 85.1 82 58.5
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 7.7e-09 64.3 42 69.0
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 2.9e-08 62.4 91 46.2


User provided reference genes

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