Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G052070 Manihot esculenta HOM05D001951 ORTHO05D008049 1.4e-22 108.6 50 100.0
Manes.15G022200 Manihot esculenta HOM05D001951 ORTHO05D008049 2.2e-07 58.2 29 86.2
PGR031G2492 Punica granatum HOM05D001951 ORTHO05D008049 2.2e-07 58.2 29 86.2
arahy.Tifrunner.gnm1.ann1.2PKL34 Arachis hypogaea HOM05D001951 ORTHO05D008049 3.7e-07 57.4 30 80.0
GSVIVG01017881001 Vitis vinifera HOM05D001951 ORTHO05D008049 4.8e-07 57.0 29 82.8
FvH4_4g14400 Fragaria vesca HOM05D001951 ORTHO05D008049 6.3e-07 56.6 29 79.3
FAN12G2276 Fragaria x ananassa HOM05D001951 ORTHO05D008049 6.3e-07 56.6 29 79.3
FAN17G0265 Fragaria x ananassa HOM05D001951 ORTHO05D008049 6.3e-07 56.6 29 79.3
FAN22G1167 Fragaria x ananassa HOM05D001951 ORTHO05D008049 6.3e-07 56.6 29 79.3
RcHm_v2.0_Chr4g0418491 Rosa chinensis HOM05D001951 ORTHO05D008049 6.3e-07 56.6 29 79.3
Prupe.1G150300 Prunus persica HOM05D001951 ORTHO05D008049 8.2e-07 56.2 29 79.3
arahy.Tifrunner.gnm1.ann1.71XP3A Arachis hypogaea HOM05D001951 ORTHO05D008049 1.1e-06 55.8 29 79.3
MSTRG.3986 Avicennia marina HOM05D001951 ORTHO05D008049 1.1e-06 55.8 29 79.3
Duzib151G0504 Durio zibethinus HOM05D001951 ORTHO05D008049 1.1e-06 55.8 29 79.3
Gohir.A10G113200 Gossypium hirsutum HOM05D001951 ORTHO05D008049 1.1e-06 55.8 29 82.8
Gohir.D10G152966 Gossypium hirsutum HOM05D001951 ORTHO05D008049 1.1e-06 55.8 29 82.8
Gorai.011G170000 Gossypium raimondii HOM05D001951 ORTHO05D008049 1.1e-06 55.8 29 82.8
Thecc.04G220800 Theobroma cacao HOM05D001951 ORTHO05D008049 1.1e-06 55.8 29 79.3
Atru.chr4.2581 Acer truncatum HOM05D001951 ORTHO05D008049 1.4e-06 55.5 29 75.9
BcaB08g36626 Brassica carinata HOM05D001951 ORTHO05D008049 1.4e-06 55.5 27 81.5
BcaC04g18626 Brassica carinata HOM05D001951 ORTHO05D008049 1.4e-06 55.5 27 81.5
A10p20660 Brassica napus HOM05D001951 ORTHO05D008049 1.4e-06 55.5 27 81.5
BolC9t58614H Brassica oleracea HOM05D001951 ORTHO05D009507 1.4e-06 55.5 27 81.5
BraA10t44129Z Brassica rapa HOM05D001951 ORTHO05D008049 1.4e-06 55.5 27 81.5
Cfa015576 Carpinus fangiana HOM05D001951 ORTHO05D008049 1.4e-06 55.5 29 75.9
Potri.008G201700 Populus trichocarpa HOM05D001951 ORTHO05D008049 1.4e-06 55.5 29 75.9
QL06p005435 Quercus lobata HOM05D001951 ORTHO05D008049 1.4e-06 55.5 29 79.3
MSTRG.10020 Avicennia marina HOM05D001951 ORTHO05D008049 1.8e-06 55.1 29 75.9
Aa31LG5G16690 Aethionema arabicum HOM05D001951 ORTHO05D008049 2.4e-06 54.7 27 81.5
AT3G06180 Arabidopsis thaliana HOM05D001951 ORTHO05D008049 2.4e-06 54.7 27 81.5
Carub.0003s0562 Capsella rubella HOM05D001951 ORTHO05D008049 2.4e-06 54.7 27 81.5
Cpa.g.sc16.32 Carica papaya HOM05D001951 ORTHO05D008049 2.4e-06 54.7 27 81.5
PSO170G4439 Papaver somniferum HOM05D001951 ORTHO05D008049 2.4e-06 54.7 29 79.3
RcHm_v2.0_Chr4g0415911 Rosa chinensis HOM05D001951 ORTHO05D008049 2.4e-06 54.7 27 81.5
SGA_v2.0_scaffold142G35605 Striga asiatica HOM05D001951 ORTHO05D008049 2.4e-06 54.7 31 77.4
THA.LOC104818788 Tarenaya hassleriana HOM05D001951 ORTHO05D008049 2.4e-06 54.7 27 81.5
THA.LOC104822313 Tarenaya hassleriana HOM05D001951 ORTHO05D008049 2.4e-06 54.7 27 81.5
Manes.03G185400 Manihot esculenta HOM05D001951 ORTHO05D008049 3.1e-06 54.3 29 82.8
Potri.010G030000 Populus trichocarpa HOM05D001951 ORTHO05D008049 3.1e-06 54.3 29 72.4
TAR636G2172 Trochodendron aralioides HOM05D001951 ORTHO05D008049 3.1e-06 54.3 29 75.9
BcaB08g36625 Brassica carinata HOM05D001951 ORTHO05D008049 4.1e-06 53.9 26 80.8
CANSAT78G1560 Cannabis sativa HOM05D001951 ORTHO05D008049 4.1e-06 53.9 27 81.5
Sabra10G0011300 Salix brachista HOM05D001951 ORTHO05D008049 4.1e-06 53.9 32 71.9
Sed0025587 Sechium edule HOM05D001951 ORTHO05D008049 4.1e-06 53.9 29 79.3
AL3G17040 Arabidopsis lyrata HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
BcaB04g21324 Brassica carinata HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
BcaC09g47878 Brassica carinata HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
BolC1t05635H Brassica oleracea HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
BraA01t04450Z Brassica rapa HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
Haze_00970 Corylus avellana HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
Oeu029302.1 Olea europaea HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
Sp3g05140 Schrenkiella parvula HOM05D001951 ORTHO05D008049 5.3e-06 53.5 27 77.8
AL6G30380 Arabidopsis lyrata HOM05D001951 ORTHO05D008049 7.0e-06 53.1 27 77.8
CiPaw.02G091400 Carya illinoinensis HOM05D001951 ORTHO05D008049 7.0e-06 53.1 29 69.0
Ciclev10005941m.g Citrus clementina HOM05D001951 ORTHO05D008049 7.0e-06 53.1 29 69.0
FAN07G0345 Fragaria x ananassa HOM05D001951 ORTHO05D008049 7.0e-06 53.1 26 80.8
SalBow2G0680 Salvia bowleyana HOM05D001951 ORTHO05D008049 7.0e-06 53.1 27 77.8
Actinidia40195 Actinidia chinensis HOM05D001951 ORTHO05D008049 9.1e-06 52.8 29 79.3
Sp6g25360 Schrenkiella parvula HOM05D001951 ORTHO05D008049 9.1e-06 52.8 27 81.5
Sc13g0003900 Simmondsia chinensis HOM05D001951 ORTHO05D008049 9.1e-06 52.8 29 72.4


User provided reference genes

Program Settings