Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 0.0e+00 2251.9 1168 100.0
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 0.0e+00 1199.9 1168 55.6
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 0.0e+00 1197.2 1169 55.3
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 0.0e+00 1127.5 1164 51.4
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 0.0e+00 1113.2 1167 51.7
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 0.0e+00 1088.6 1168 51.2
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 0.0e+00 1086.6 1168 51.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 8.0e-312 1074.3 1172 50.7
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 2.4e-311 1072.4 1172 50.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.0e-304 1050.4 1174 50.0
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.3e-301 1039.3 1173 49.5
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 2.0e-297 1026.2 1168 48.5
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 6.1e-294 1014.6 1161 48.2
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.0e-288 997.3 1165 47.6
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.8e-285 986.5 1198 46.4
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.7e-283 979.9 1197 46.4
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 1.4e-277 960.3 1157 46.8
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 1.2e-276 957.2 1170 46.2
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 3.7e-275 952.2 1175 48.4
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.5e-271 940.3 1100 48.3
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.5e-265 919.1 1167 45.5
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 3.6e-262 909.1 1162 43.5
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.7e-260 901.7 1166 44.8
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 2.2e-259 899.8 1166 44.9
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 3.7e-259 899.0 1172 45.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 4.9e-259 898.7 1171 44.4
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.4e-258 896.3 1185 44.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 7.8e-257 891.3 1104 46.2
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.9e-255 886.7 1174 44.5
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 2.1e-254 883.2 1199 43.8
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 6.1e-254 881.7 1164 44.2
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 6.1e-254 881.7 1175 44.3
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.3e-253 879.8 1162 44.1
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.5e-252 877.1 1168 44.3
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.3e-248 864.0 939 50.5
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 5.0e-248 862.1 981 50.4
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 2.8e-246 856.3 1167 43.6
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.2e-244 850.9 1171 43.3
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.0e-236 823.5 1190 41.8
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 9.9e-236 821.2 1164 43.0
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.3e-235 820.8 1175 40.5
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.2e-234 816.2 1175 40.5
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 4.1e-234 815.8 1167 41.4
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 1.6e-230 803.9 1268 40.1
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 6.2e-230 802.0 1002 44.5
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 4.1e-226 789.3 1167 40.4
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 4.1e-226 789.3 1169 40.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 4.1e-226 789.3 1177 40.4
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.3e-224 784.3 1167 40.0
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 8.7e-224 781.6 1167 39.9
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.9e-223 780.4 1182 39.9
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 5.6e-223 778.9 1055 42.9
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 5.8e-220 768.8 909 47.1
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 4.2e-218 762.7 1167 39.2
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 7.1e-218 761.9 1168 38.8
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 2.1e-217 760.4 1166 39.4
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.7e-217 760.0 1166 40.4
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 5.1e-216 755.7 1170 40.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 6.6e-216 755.4 1185 38.8
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.1e-215 754.6 1174 40.0
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.9e-215 753.8 1167 39.9
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 7.3e-215 751.9 1180 39.4
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.6e-214 750.7 1185 38.6
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.6e-214 750.7 1185 38.6
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 2.8e-214 750.0 1180 39.2
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 3.6e-214 749.6 1162 39.6
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.1e-213 748.0 1189 38.5
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 6.9e-213 745.3 1168 38.7
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 4.5e-212 742.7 1171 38.9
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.7e-211 740.7 1182 37.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.1e-209 733.8 1168 38.7
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.8e-206 723.4 1158 37.5
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 3.7e-206 723.0 1168 39.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.0e-204 717.2 1174 37.7
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.5e-201 706.4 1184 38.6
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 6.0e-201 705.7 1179 37.7
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 7.9e-201 705.3 1171 37.1
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 9.6e-199 698.4 1173 37.4
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 8.2e-198 695.3 1169 37.4
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 9.0e-197 691.8 1174 37.3
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.1e-193 680.6 1193 38.1
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.7e-187 661.0 1217 35.8
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 3.8e-179 633.3 900 40.8
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 5.0e-179 632.9 1126 37.9
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 5.1e-176 622.9 1175 35.5
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 5.1e-176 622.9 1170 36.2
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 3.7e-174 616.7 966 38.1
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.3e-173 612.8 984 38.9
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 5.9e-172 609.4 1170 34.6
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 4.8e-158 563.1 1152 34.7
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 3.1e-157 560.5 1220 32.8
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.7e-147 528.1 917 38.2
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 5.9e-140 503.1 1263 30.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.3e-138 496.9 662 42.3
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 3.0e-131 474.2 904 32.7
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.5e-127 461.8 1253 28.7
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 4.3e-114 417.2 806 34.2
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 2.1e-89 335.1 431 43.2
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.7e-86 325.5 446 42.8
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 7.1e-77 293.5 1284 24.8
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 9.3e-77 293.1 302 54.0
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 2.1e-76 292.0 303 53.8
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 8.7e-75 286.6 302 54.0
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 8.7e-75 286.6 302 54.0
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.7e-73 281.2 303 52.8
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 8.2e-73 280.0 1304 23.8
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.1e-72 279.6 303 59.1
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.5e-71 275.8 303 52.1
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.3e-66 257.7 238 63.4
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.7e-65 254.6 425 37.6
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.9e-61 242.3 1118 25.6
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 3.2e-61 241.5 274 48.9
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 7.2e-61 240.4 175 69.7
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.1e-56 226.5 234 52.6
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 7.7e-55 220.3 175 63.4
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 8.5e-54 216.9 353 39.1
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 9.4e-53 213.4 309 40.8
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.0e-51 209.9 309 40.1
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.8e-51 209.1 1181 21.1
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 6.7e-51 207.2 178 59.6
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.1e-48 199.9 175 62.9
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 9.1e-48 196.8 187 56.1
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 7.7e-47 193.7 177 60.5
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.3e-43 182.2 511 29.4
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 4.0e-43 181.4 168 61.3
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 7.5e-42 177.2 837 24.1
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.1e-40 173.3 304 34.5
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 4.8e-33 147.9 227 37.0
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 6.3e-33 147.5 409 28.1
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.7e-31 142.1 275 34.2
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.0e-30 137.9 260 33.5
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.2e-25 122.5 444 27.7
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 5.4e-24 117.9 129 50.4
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 4.5e-23 114.8 239 31.4
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.9e-22 111.7 114 55.3
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.1e-21 110.2 116 53.4
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 7.0e-16 90.9 99 55.6
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 5.6e-13 81.3 109 39.4
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 2.6e-10 72.4 107 40.2
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 3.4e-10 72.0 108 39.8
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-09 70.1 47 66.0
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 1.3e-09 70.1 51 60.8
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 2.9e-09 68.9 47 63.8
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 1.4e-08 66.6 118 33.1


User provided reference genes

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