Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 7.2e-162 573.9 306 100.0
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 4.7e-137 491.5 304 84.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 8.3e-134 480.7 295 85.1
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 8.3e-134 480.7 304 82.6
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.1e-133 480.3 292 86.6
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 4.1e-133 478.4 292 86.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.2e-132 476.9 304 81.9
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 5.0e-131 471.5 304 82.6
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 6.6e-131 471.1 296 83.4
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 8.6e-131 470.7 304 79.9
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 3.3e-130 468.8 304 82.2
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 5.5e-130 468.0 304 79.9
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 9.5e-130 467.2 303 81.8
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 2.8e-129 465.7 303 80.5
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 2.8e-129 465.7 303 80.5
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.8e-128 463.0 304 81.2
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 3.4e-127 458.8 307 79.5
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 4.4e-127 458.4 304 78.9
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.7e-127 458.0 304 78.6
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 9.8e-127 457.2 290 82.8
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 9.8e-127 457.2 304 79.6
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.3e-126 456.8 304 79.6
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.2e-126 456.1 296 81.1
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 3.7e-126 455.3 296 80.4
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.9e-126 454.9 304 78.3
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.4e-125 453.4 297 80.8
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 5.4e-125 451.4 296 81.1
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 5.4e-125 451.4 307 78.5
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 7.0e-125 451.1 296 81.4
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.7e-124 449.1 304 78.6
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 3.5e-124 448.7 307 77.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 4.5e-124 448.4 304 77.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 5.9e-124 448.0 296 79.7
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.7e-123 446.4 291 81.4
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.3e-123 446.0 304 77.0
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 3.8e-123 445.3 304 77.6
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 5.0e-123 444.9 304 77.3
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 3.3e-122 442.2 296 79.4
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 9.5e-122 440.7 307 76.9
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.6e-121 439.9 304 76.3
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 3.6e-121 438.7 305 77.0
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 4.7e-121 438.3 299 75.6
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 6.1e-121 438.0 296 79.1
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 8.0e-121 437.6 296 77.7
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.0e-120 437.2 289 80.6
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.0e-120 437.2 291 80.1
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.4e-120 436.8 296 77.4
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 4.0e-120 435.3 304 75.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 4.0e-120 435.3 304 75.0
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 2.6e-119 432.6 294 78.2
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.4e-119 431.8 297 78.1
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 5.8e-119 431.4 296 78.0
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.8e-119 431.4 295 77.3
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.8e-119 431.4 295 77.3
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.3e-118 430.3 304 74.7
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.3e-118 427.6 304 73.7
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 3.2e-117 425.6 292 77.7
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 4.1e-117 425.2 295 76.3
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 5.4e-117 424.9 313 73.5
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 5.4e-117 424.9 304 74.0
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.0e-116 422.9 290 77.2
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.0e-116 422.9 290 77.2
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 3.5e-116 422.2 304 72.4
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 7.8e-116 421.0 301 75.7
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.3e-115 420.2 303 75.2
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.3e-115 420.2 304 73.4
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.7e-115 419.9 302 75.2
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.1e-114 417.2 296 72.6
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.9e-114 416.4 296 75.3
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 1.9e-114 416.4 306 73.5
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 2.5e-114 416.0 296 72.6
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 4.3e-114 415.2 306 73.2
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 7.3e-114 414.5 296 75.0
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.3e-114 414.5 304 71.1
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 9.5e-114 414.1 296 74.3
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.2e-113 413.7 304 71.4
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.8e-113 412.5 306 73.5
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.8e-113 412.5 297 73.1
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.7e-113 411.8 304 70.4
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.2e-113 411.4 281 79.4
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.3e-112 409.5 304 70.4
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 2.3e-112 409.5 304 70.4
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.3e-112 409.5 304 70.4
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 5.2e-112 408.3 281 75.8
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 2.0e-111 406.4 292 75.3
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 4.4e-111 405.2 304 70.4
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 9.8e-111 404.1 304 69.7
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.3e-110 403.7 304 73.4
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 8.3e-110 401.0 296 71.6
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 2.4e-109 399.4 295 72.2
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 5.4e-109 398.3 297 70.0
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.0e-109 397.9 281 77.6
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 7.8e-108 394.4 281 74.4
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 3.9e-107 392.1 296 70.6
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 6.6e-107 391.3 291 71.5
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.1e-106 390.6 296 69.9
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.2e-105 387.1 298 69.8
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 6.2e-105 384.8 304 65.8
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.1e-104 382.5 298 69.8
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 7.5e-103 377.9 295 68.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.1e-101 372.1 299 65.6
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 2.3e-99 366.3 296 67.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 8.1e-97 357.8 281 68.3
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 4.4e-95 352.1 291 67.4
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 5.8e-95 351.7 290 65.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 7.6e-95 351.3 277 69.0
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 4.4e-87 325.5 228 76.8
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.5e-79 300.4 193 81.9
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.9e-78 296.2 195 80.0
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 6.0e-76 288.5 295 58.3
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 3.3e-74 282.7 306 53.3
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.1e-69 267.7 163 82.2
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 4.0e-64 249.2 295 49.5
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 4.0e-64 249.2 159 82.4
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 6.5e-62 241.9 200 66.5
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.2e-61 239.2 292 50.3
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.8e-57 226.5 191 61.3
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.1e-56 224.6 346 42.5
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.4e-55 219.5 291 48.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.5e-53 213.4 139 80.6
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 2.6e-47 193.4 142 69.7
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 3.4e-47 193.0 236 54.2
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 3.7e-41 172.9 186 55.9
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.0e-38 164.9 115 76.5
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.2e-38 163.7 206 48.5
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 2.7e-36 156.8 102 78.4
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 5.3e-32 142.5 99 72.7
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.6e-31 141.0 172 48.8
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.5e-31 139.4 97 76.3
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.1e-29 134.8 182 42.3
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 5.2e-19 99.4 86 65.1
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 8.3e-17 92.0 85 70.6
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 2.4e-16 90.5 58 75.9
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.6e-15 87.8 313 28.8
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 1.6e-15 87.8 48 83.3
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 2.0e-15 87.4 282 28.7
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 3.8e-14 83.2 81 53.1
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.9e-13 80.9 150 39.3
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 9.5e-13 78.6 172 37.2
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 5.7e-10 69.3 195 30.8


User provided reference genes

Program Settings