Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G049740 Manihot esculenta HOM05D002663 ORTHO05D002988 6.1e-48 193.7 93 100.0
Manes.05G070100 Manihot esculenta HOM05D002663 ORTHO05D002988 4.7e-40 167.5 99 83.8
Glyma.05G165200 Glycine max HOM05D002663 ORTHO05D002988 9.5e-33 143.3 99 68.7
Glyma.08G122600 Glycine max HOM05D002663 ORTHO05D002988 9.5e-33 143.3 99 69.7
Phvul.002G245400 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 2.8e-32 141.7 99 67.7
Ca_17862_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 6.2e-32 140.6 99 68.7
Atru.chr5.1301_Atru.chr5.1302 Acer truncatum HOM05D002663 ORTHO05D002988 1.4e-31 139.4 99 66.7
Psat7g065720 Pisum sativum HOM05D002663 ORTHO05D002988 2.3e-31 138.7 99 66.7
Cpa.g.sc9.146 Carica papaya HOM05D002663 ORTHO05D002988 6.8e-31 137.1 99 66.7
Potri.015G042100 Populus trichocarpa HOM05D002663 ORTHO05D002988 6.8e-31 137.1 99 66.7
FvH4_2g24450 Fragaria vesca HOM05D002663 ORTHO05D002988 1.2e-30 136.3 99 64.6
FAN24G0935 Fragaria x ananassa HOM05D002663 ORTHO05D002988 1.2e-30 136.3 99 64.6
Lalb_Chr13g0295491 Lupinus albus HOM05D002663 ORTHO05D002988 1.2e-30 136.3 99 65.7
arahy.Tifrunner.gnm1.ann1.IMR5XM Arachis hypogaea HOM05D002663 ORTHO05D002988 1.5e-30 136.0 99 63.6
arahy.Tifrunner.gnm1.ann1.JDYV4L Arachis hypogaea HOM05D002663 ORTHO05D002988 1.5e-30 136.0 99 63.6
Lj4g0008753 Lotus japonicus HOM05D002663 ORTHO05D002988 2.0e-30 135.6 97 66.0
MD11G1296300 Malus domestica HOM05D002663 ORTHO05D002988 3.4e-30 134.8 99 63.6
Prupe.8G250200 Prunus persica HOM05D002663 ORTHO05D002988 3.4e-30 134.8 99 62.6
TWI14G0131 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 1.3e-29 132.9 99 63.6
QL12p023424 Quercus lobata HOM05D002663 ORTHO05D002988 1.7e-29 132.5 98 64.3
CANSAT25G2471 Cannabis sativa HOM05D002663 ORTHO05D002988 2.2e-29 132.1 99 65.7
RcHm_v2.0_Chr6g0292291 Rosa chinensis HOM05D002663 ORTHO05D002988 2.2e-29 132.1 99 63.6
Gohir.D11G123700 Gossypium hirsutum HOM05D002663 ORTHO05D002988 2.9e-29 131.7 99 61.6
Gohir.A11G118800 Gossypium hirsutum HOM05D002663 ORTHO05D002988 3.7e-29 131.3 99 60.6
Haze_04793 Corylus avellana HOM05D002663 ORTHO05D002988 1.1e-28 129.8 97 64.9
Gorai.007G132600 Gossypium raimondii HOM05D002663 ORTHO05D002988 1.1e-28 129.8 99 60.6
CiPaw.07G098000 Carya illinoinensis HOM05D002663 ORTHO05D002988 1.4e-28 129.4 99 62.6
Sed0012646 Sechium edule HOM05D002663 ORTHO05D002988 3.2e-28 128.3 99 60.6
Thecc.01G288300 Theobroma cacao HOM05D002663 ORTHO05D002988 4.1e-28 127.9 99 61.6
Migut.N02124 Erythranthe guttata HOM05D002663 ORTHO05D002988 7.1e-28 127.1 99 58.6
MELO3C023740.2 Cucumis melo HOM05D002663 ORTHO05D002988 9.2e-28 126.7 97 58.8
TAR362G0766 Trochodendron aralioides HOM05D002663 ORTHO05D002988 9.2e-28 126.7 99 62.6
vmacro02520 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 9.2e-28 126.7 99 59.6
COL.COLO4_08048 Corchorus olitorius HOM05D002663 ORTHO05D002988 1.2e-27 126.3 93 64.5
Cfa006059 Carpinus fangiana HOM05D002663 ORTHO05D002988 1.6e-27 125.9 99 61.6
CsaV3_3G020180 Cucumis sativus L. HOM05D002663 ORTHO05D002988 1.6e-27 125.9 97 57.7
AUR62036674 Chenopodium quinoa HOM05D002663 ORTHO05D002988 2.7e-27 125.2 99 58.6
AUR62044300 Chenopodium quinoa HOM05D002663 ORTHO05D002988 2.7e-27 125.2 99 58.6
Lsat_1_v5_gn_5_189660 Lactuca sativa HOM05D002663 ORTHO05D002988 2.7e-27 125.2 97 61.9
AUR62034595 Chenopodium quinoa HOM05D002663 ORTHO05D002988 3.5e-27 124.8 99 60.6
FAN27G1532 Fragaria x ananassa HOM05D002663 ORTHO05D002988 3.5e-27 124.8 106 58.5
Cc01_g20050 Coffea canephora HOM05D002663 ORTHO05D002988 6.0e-27 124.0 97 60.8
Sabra15G0051000 Salix brachista HOM05D002663 ORTHO05D002988 6.0e-27 124.0 108 57.4
Sabra15G0061200 Salix brachista HOM05D002663 ORTHO05D002988 6.0e-27 124.0 108 57.4
Eucgr.K03423 Eucalyptus grandis HOM05D002663 ORTHO05D002988 1.0e-26 123.2 99 57.6
Lj1A40T82 Lonicera japonica HOM05D002663 ORTHO05D002988 1.0e-26 123.2 97 57.7
Nitab4.5_0010231g0020 Nicotiana tabacum HOM05D002663 ORTHO05D002988 1.3e-26 122.9 99 59.6
Sabra15G0054700 Salix brachista HOM05D002663 ORTHO05D002988 1.3e-26 122.9 114 54.4
EL10Ac5g11662 Beta vulgaris HOM05D002663 ORTHO05D002988 3.0e-26 121.7 99 59.6
PGR044G1923 Punica granatum HOM05D002663 ORTHO05D002988 5.1e-26 120.9 99 56.6
Sabra15G0047600 Salix brachista HOM05D002663 ORTHO05D002988 6.6e-26 120.6 109 56.9
Hma1.2p1_1651F.1_g295770 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 1.1e-25 119.8 99 56.6
MBI19_g25933_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 1.5e-25 119.4 99 55.6
Oeu001452.1 Olea europaea HOM05D002663 ORTHO05D002988 1.5e-25 119.4 99 54.5
Sabra15G0043200 Salix brachista HOM05D002663 ORTHO05D002988 1.5e-25 119.4 109 56.0
Sabra15G0059500 Salix brachista HOM05D002663 ORTHO05D002988 1.5e-25 119.4 109 56.0
DCAR_018373 Daucus carota HOM05D002663 ORTHO05D002988 3.3e-25 118.2 99 54.5
ECA248G0286 Erigeron canadensis HOM05D002663 ORTHO05D002988 3.3e-25 118.2 97 55.7
Nitab4.5_0001651g0140 Nicotiana tabacum HOM05D002663 ORTHO05D002988 3.3e-25 118.2 99 56.6
Sabra15G0045400 Salix brachista HOM05D002663 ORTHO05D002988 3.3e-25 118.2 109 56.0
HPP92_011329 Vanilla planifolia HOM05D002663 ORTHO05D002988 3.3e-25 118.2 97 57.7
EL10Ac8g19575 Beta vulgaris HOM05D002663 ORTHO05D002988 7.3e-25 117.1 99 57.6
PGSC0003DMG400016854 Solanum tuberosum HOM05D002663 ORTHO05D002988 9.5e-25 116.7 99 55.6
Solyc09g074310.3 Solanum lycopersicum HOM05D002663 ORTHO05D002988 1.6e-24 115.9 99 54.5
Ah.08g212770 Amaranthus hybridus HOM05D002663 ORTHO05D002988 2.8e-24 115.2 97 56.7
Sopen09g029140 Solanum pennellii HOM05D002663 ORTHO05D002988 2.8e-24 115.2 99 55.6
Rhsim13G0018700 Rhododendron simsii HOM05D002663 ORTHO05D002988 3.6e-24 114.8 99 55.6
ATR0487G012 Amborella trichopoda HOM05D002663 ORTHO05D002988 4.7e-24 114.4 99 56.6
unitig_744.g24628 Utricularia gibba HOM05D002663 ORTHO05D002988 1.1e-23 113.2 99 51.5
HanXRQChr11g0334821 Helianthus annuus HOM05D002663 ORTHO05D002988 2.0e-22 109.0 97 51.5
CDE05G2057 Ceratophyllum demersum HOM05D002663 ORTHO05D002988 2.6e-22 108.6 99 55.6
Peaxi162Scf00006g03625 Petunia axillaris HOM05D002663 ORTHO05D002988 3.4e-22 108.2 96 54.2
Actinidia00709 Actinidia chinensis HOM05D002663 ORTHO05D002988 5.8e-22 107.5 89 57.3
CAN.G806.1 Capsicum annuum HOM05D002663 ORTHO05D002988 9.9e-22 106.7 99 50.5
Os11g0645200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 9.9e-22 106.7 99 51.5
Medtr8g088170 Medicago truncatula HOM05D000825 ORTHO05D003684 2.2e-21 105.5 74 68.9
Dinv11283 Davidia involucrata HOM05D002663 ORTHO05D002988 2.9e-21 105.1 92 54.3
Hund05368 Selenicereus undatus HOM05D002663 ORTHO05D002988 7.1e-20 100.5 130 43.8
FAN20G1908 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.2e-20 100.1 102 51.0
TPR.G6761 Trifolium pratense HOM05D000825 ORTHO05D003684 9.2e-20 100.1 79 60.8
Sc24g0004040 Simmondsia chinensis HOM05D002663 ORTHO05D002988 1.0e-18 96.7 88 52.3
GSVIVG01011027001 Vitis vinifera HOM05D002663 ORTHO05D002988 1.3e-18 96.3 83 55.4
AUR62036670 Chenopodium quinoa HOM05D002663 ORTHO05D002988 8.1e-16 87.0 93 47.3
Pp3c21_17600 Physcomitrium patens HOM05D002663 ORTHO05D002988 2.0e-14 82.4 94 41.5
Sabra15G0053600 Salix brachista HOM05D002663 ORTHO05D002988 5.8e-14 80.9 88 51.1
CBR_g410 Chara braunii HOM05D002663 ORTHO05D002988 4.9e-13 77.8 95 45.3
Mapoly0131s0005 Marchantia polymorpha HOM05D002663 ORTHO05D002988 4.9e-13 77.8 92 41.3
SMO236G0130 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 4.9e-13 77.8 113 38.1
CBR_g34010 Chara braunii HOM05D002663 ORTHO05D002988 6.4e-13 77.4 95 45.3
Sabra15G0045100 Salix brachista HOM05D002663 ORTHO05D002988 8.4e-13 77.0 88 48.9
ClCG05G012270 Citrullus lanatus HOM05D002663 ORTHO05D002988 4.3e-09 64.7 45 64.4
ECA240G1813 Erigeron canadensis HOM05D001289 ORTHO05D002298 5.6e-09 64.3 114 38.6
VMungo0251G0385 Vigna mungo HOM05D002663 ORTHO05D002988 5.6e-09 64.3 45 66.7
Aa31LG1G20460 Aethionema arabicum HOM05D002663 ORTHO05D002988 7.3e-09 63.9 112 40.2
Gohir.D01G023000 Gossypium hirsutum HOM05D002663 ORTHO05D002988 9.6e-09 63.5 114 38.6
Gorai.002G025400 Gossypium raimondii HOM05D002663 ORTHO05D002988 9.6e-09 63.5 114 38.6
Os03g0611200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 9.6e-09 63.5 114 37.7
BcaC07g36908 Brassica carinata HOM05D002663 ORTHO05D002988 1.3e-08 63.2 112 38.4
C05p02610 Brassica napus HOM05D002663 ORTHO05D002988 1.3e-08 63.2 112 38.4
Gohir.D01G023100 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.3e-08 63.2 112 37.5
HanXRQChr03g0091441 Helianthus annuus HOM05D002663 ORTHO05D002988 1.6e-08 62.8 114 37.7
Gorai.002G025500 Gossypium raimondii HOM05D002663 ORTHO05D002988 2.1e-08 62.4 112 37.5
Sp1g03240 Schrenkiella parvula HOM05D002663 ORTHO05D002988 2.8e-08 62.0 112 38.4
Thhalv10007737m.g Eutrema salsugineum HOM05D002663 ORTHO05D002988 3.6e-08 61.6 112 37.5
A10p02860 Brassica napus HOM05D002663 ORTHO05D002988 4.8e-08 61.2 112 37.5
ECA240G4022 Erigeron canadensis HOM05D002663 ORTHO05D002988 4.8e-08 61.2 92 40.2
CARHR003760 Cardamine hirsuta HOM05D002663 ORTHO05D002988 8.1e-08 60.5 112 38.4
Gohir.A01G024900 Gossypium hirsutum HOM05D002663 ORTHO05D002988 8.1e-08 60.5 114 37.7
Thecc.04G256100 Theobroma cacao HOM05D002663 ORTHO05D002988 8.1e-08 60.5 114 38.6
Hma1.2p1_0992F.1_g245210 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 1.1e-07 60.1 112 37.5
Carub.0001s0360 Capsella rubella HOM05D002663 ORTHO05D002988 1.4e-07 59.7 112 37.5
Cre17.g699900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 1.4e-07 59.7 107 36.4
PRCOL_00006218 Prasinoderma coloniale HOM05D002663 ORTHO05D002988 1.4e-07 59.7 108 35.2
AL1G14030 Arabidopsis lyrata HOM05D002663 ORTHO05D002988 1.8e-07 59.3 112 37.5
Lsat_1_v5_gn_3_120601 Lactuca sativa HOM05D002663 ORTHO05D002988 1.8e-07 59.3 92 39.1
PSO063G6804 Papaver somniferum HOM05D002663 ORTHO05D002988 1.8e-07 59.3 114 36.8
BolC5t29042H Brassica oleracea HOM05D002663 ORTHO05D002988 2.4e-07 58.9 108 38.9
PSO017G0007 Papaver somniferum HOM05D002663 ORTHO05D002988 2.4e-07 58.9 114 36.8
Cfa022963 Carpinus fangiana HOM05D002663 ORTHO05D002988 3.1e-07 58.5 92 39.1
CiPaw.01G184000 Carya illinoinensis HOM05D002663 ORTHO05D002988 3.1e-07 58.5 112 36.6
Zm00001eb051500 Zea mays HOM05D002663 ORTHO05D002988 3.1e-07 58.5 111 34.2
Prupe.1G039700 Prunus persica HOM05D002663 ORTHO05D002988 5.3e-07 57.8 115 35.7
FvH4_4g03680 Fragaria vesca HOM05D002663 ORTHO05D002988 6.9e-07 57.4 112 34.8
FAN12G2471 Fragaria x ananassa HOM05D002663 ORTHO05D002988 6.9e-07 57.4 112 34.8
ATR0736G162 Amborella trichopoda HOM05D002663 ORTHO05D002988 9.0e-07 57.0 111 36.9
BraA10t42553Z Brassica rapa HOM05D002663 ORTHO05D002988 9.0e-07 57.0 108 38.0
CDE05G0856 Ceratophyllum demersum HOM05D000039 ORTHO05D002988 9.0e-07 57.0 45 60.0
CsaV3_1G005010 Cucumis sativus L. HOM05D002663 ORTHO05D002988 9.0e-07 57.0 112 35.7
Duzib151G0352 Durio zibethinus HOM05D002663 ORTHO05D002988 9.0e-07 57.0 112 35.7
FAN17G1274 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.0e-07 57.0 112 34.8
FAN22G0078 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.0e-07 57.0 112 34.8
Lj3A693G73 Lonicera japonica HOM05D002663 ORTHO05D002988 9.0e-07 57.0 112 36.6
Oeu011504.1 Olea europaea HOM05D002663 ORTHO05D002988 9.0e-07 57.0 114 36.0
Prupe.1G040000 Prunus persica HOM05D002663 ORTHO05D002988 9.0e-07 57.0 92 38.0
SEGI_11814 Sequoiadendron giganteum HOM05D002663 ORTHO05D002988 9.0e-07 57.0 111 33.3
THA.LOC104801083 Tarenaya hassleriana HOM05D002663 ORTHO05D002988 9.0e-07 57.0 112 35.7
AT1G04420 Arabidopsis thaliana HOM05D002663 ORTHO05D002988 1.2e-06 56.6 112 36.6
Nn1g02781 Nelumbo nucifera HOM05D002663 ORTHO05D002988 1.2e-06 56.6 92 40.2
Cc03_g05580 Coffea canephora HOM05D002663 ORTHO05D002988 1.5e-06 56.2 92 37.0
Potri.008G167400 Populus trichocarpa HOM05D002663 ORTHO05D002988 1.5e-06 56.2 112 34.8
unitig_26.g9552 Utricularia gibba HOM05D002663 ORTHO05D002988 1.5e-06 56.2 112 36.6
COL.COLO4_15882 Corchorus olitorius HOM05D002663 ORTHO05D002988 2.0e-06 55.8 92 37.0
AagrBONN_evm.TU.Sc2ySwM_228.654 Anthoceros agrestis HOM05D002663 ORTHO05D002988 2.6e-06 55.5 78 34.6
ClCG04G012670 Citrullus lanatus HOM05D002663 ORTHO05D002988 2.6e-06 55.5 112 34.8
MELO3C001939.2 Cucumis melo HOM05D002663 ORTHO05D002988 2.6e-06 55.5 112 34.8
Migut.N00273 Erythranthe guttata HOM05D002663 ORTHO05D002988 2.6e-06 55.5 114 35.1
QL06p018104 Quercus lobata HOM05D002663 ORTHO05D002988 2.6e-06 55.5 112 35.7
DCAR_024256 Daucus carota HOM05D002663 ORTHO05D002988 3.4e-06 55.1 114 36.0
Ciclev10005068m.g Citrus clementina HOM05D002663 ORTHO05D002988 4.4e-06 54.7 92 35.9
Sc13g0005480 Simmondsia chinensis HOM05D002663 ORTHO05D002988 5.8e-06 54.3 112 33.9
CAN.G374.14 Capsicum annuum HOM05D002663 ORTHO05D002988 7.6e-06 53.9 112 34.8
Ca_12013_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 7.6e-06 53.9 92 37.0
Glyma.02G005200 Glycine max HOM05D002663 ORTHO05D002988 7.6e-06 53.9 92 37.0
PRCOL_00000820 Prasinoderma coloniale HOM05D002663 ORTHO05D002988 7.6e-06 53.9 100 34.0
RcHm_v2.0_Chr4g0393301 Rosa chinensis HOM05D002663 ORTHO05D002988 7.6e-06 53.9 112 33.0
Cre10.g461900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 9.9e-06 53.5 109 33.9
MBI07_g16927_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 9.9e-06 53.5 112 36.6


User provided reference genes

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