Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 5.0e-257 890.6 445 100.0
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.1e-210 735.7 447 80.5
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.4e-206 723.0 447 80.1
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 3.0e-201 705.3 440 79.1
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 4.8e-199 698.0 446 76.9
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 2.0e-197 692.6 447 77.4
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.4e-195 686.4 447 77.0
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.5e-195 685.6 444 77.0
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.1e-194 682.6 449 76.4
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.7e-194 682.2 447 75.2
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.0e-193 678.7 447 75.6
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 5.1e-193 677.9 445 76.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.1e-192 676.8 442 76.2
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.8e-191 672.2 442 75.1
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.2e-189 666.8 441 73.9
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 7.7e-189 664.1 448 73.4
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.7e-186 655.6 440 73.4
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.6e-186 655.2 448 72.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.6e-186 655.2 446 70.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.0e-185 652.1 448 73.4
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 6.7e-185 651.0 448 71.2
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-184 650.2 450 72.4
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.5e-184 649.8 448 73.2
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.4e-184 648.3 444 71.8
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.7e-184 647.9 448 72.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 7.4e-184 647.5 443 73.1
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.3e-183 646.7 448 70.3
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.8e-183 645.6 444 71.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.7e-183 645.2 450 71.8
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.4e-182 643.3 442 71.7
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.8e-182 642.9 442 73.5
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 9.1e-182 640.6 437 71.6
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 2.6e-181 639.0 435 71.0
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.5e-181 638.3 444 70.7
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 7.7e-181 637.5 444 70.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 9.4e-179 630.6 396 78.3
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.4e-177 626.7 440 70.7
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.8e-177 626.3 432 71.1
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.3e-177 625.9 441 70.7
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 5.2e-177 624.8 440 69.1
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.0e-176 622.9 444 67.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.6e-176 622.5 437 70.7
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 3.3e-176 622.1 446 68.8
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 4.4e-176 621.7 417 75.5
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.7e-175 618.6 445 69.0
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.4e-174 616.7 441 71.2
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.8e-174 616.3 447 68.9
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.2e-173 613.6 441 71.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.0e-173 612.8 447 69.1
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 7.7e-173 610.9 434 68.9
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 1.0e-172 610.5 433 68.6
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.7e-172 609.8 448 68.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 3.8e-172 608.6 447 68.9
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.5e-171 606.7 432 69.0
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 3.2e-171 605.5 430 69.1
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 3.2e-171 605.5 430 68.6
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 3.2e-171 605.5 434 69.4
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 5.5e-171 604.7 447 68.7
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 9.4e-171 604.0 443 67.0
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.2e-170 603.6 447 68.7
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.7e-170 602.4 412 70.6
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 4.7e-170 601.7 436 69.5
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 4.7e-170 601.7 447 68.7
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 1.8e-169 599.7 443 69.1
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.2e-168 597.0 437 69.8
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 2.6e-168 595.9 447 68.0
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 2.2e-167 592.8 444 66.9
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 3.7e-167 592.0 445 67.4
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 8.3e-167 590.9 411 71.5
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 4.1e-166 588.6 409 70.4
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.9e-163 579.7 433 65.6
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.9e-163 579.7 442 66.1
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.2e-162 577.0 438 68.3
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.6e-162 576.6 436 66.5
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 3.6e-162 575.5 440 64.3
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 3.0e-161 572.4 433 68.1
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 3.0e-161 572.4 437 65.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.2e-160 570.5 438 66.4
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.2e-160 570.5 438 66.4
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.7e-159 566.6 455 64.4
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 2.0e-157 559.7 474 62.0
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 2.7e-157 559.3 451 65.4
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.7e-157 559.3 452 65.0
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 3.5e-157 558.9 434 64.7
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.7e-156 556.6 448 64.5
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 2.3e-156 556.2 437 65.2
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 3.8e-156 555.4 448 65.0
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.0e-156 555.1 452 64.6
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 1.5e-155 553.5 442 64.9
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.9e-155 553.1 451 65.0
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.2e-154 550.4 437 63.2
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.8e-154 549.3 438 65.5
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.8e-154 549.3 438 65.5
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.4e-153 547.0 450 64.2
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 3.0e-153 545.8 450 64.7
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.0e-153 545.8 439 63.1
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 4.4e-152 542.0 395 66.6
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 9.8e-152 540.8 383 70.8
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-151 540.4 350 74.3
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.7e-151 540.0 447 64.9
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 1.4e-150 537.0 455 63.7
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.8e-150 536.6 449 64.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 4.1e-150 535.4 455 64.0
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 4.1e-150 535.4 455 64.0
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 7.0e-150 534.6 453 62.7
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.7e-149 532.7 447 63.8
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 3.5e-149 532.3 444 64.2
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 3.5e-149 532.3 349 75.4
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.0e-148 530.8 450 63.6
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.0e-148 530.8 350 74.0
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 8.6e-148 527.7 450 62.4
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.3e-147 525.8 431 61.9
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.8e-146 522.7 440 62.7
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 8.0e-146 521.2 442 59.3
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.0e-145 520.8 421 62.9
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.7e-143 513.5 449 61.7
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.7e-143 513.5 442 59.0
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.1e-142 510.8 427 59.7
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.7e-141 506.1 347 70.9
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 2.7e-141 506.1 409 60.9
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.9e-139 500.0 368 68.8
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.2e-136 490.7 446 58.5
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.4e-134 483.0 377 64.5
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 4.6e-133 478.8 319 73.4
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.4e-120 436.0 330 65.8
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.2e-117 427.6 446 52.7
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 2.7e-117 426.4 370 61.6
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.4e-110 403.3 383 57.4
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.5e-104 384.0 320 61.6
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.5e-104 384.0 320 61.6
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 4.9e-95 352.4 434 48.2
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.1e-91 341.3 389 47.6
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.4e-81 307.0 243 63.0
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 2.6e-72 276.9 190 70.5
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.1e-70 271.6 250 57.6
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.8e-68 264.2 393 42.2
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.6e-64 250.4 149 80.5
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.3e-59 233.4 159 70.4
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 3.8e-55 219.9 282 45.7
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.1e-38 165.2 107 72.9
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 3.6e-37 160.2 153 54.2
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 4.4e-35 153.3 144 59.7
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.6e-32 144.8 110 70.9
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.3e-31 141.7 111 68.5
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 4.0e-28 130.2 99 58.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.0e-15 89.0 52 76.9
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.1e-08 64.7 67 50.7


User provided reference genes

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