Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 6.6e-249 863.6 443 100.0
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 2.2e-204 715.7 432 83.1
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 1.6e-202 709.5 440 81.8
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 4.3e-192 674.9 426 78.2
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 5.6e-192 674.5 456 76.3
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 3.7e-191 671.8 429 79.3
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 4.0e-190 668.3 408 81.4
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.2e-189 666.8 428 78.7
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 2.0e-189 666.0 428 77.6
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 4.5e-189 664.8 440 77.0
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 1.3e-188 663.3 428 78.3
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.7e-188 662.9 431 76.8
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 4.9e-188 661.4 426 77.2
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 8.4e-188 660.6 433 77.4
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.1e-187 660.2 433 77.6
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.1e-187 660.2 434 77.0
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.9e-187 659.4 426 77.5
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 1.2e-186 656.8 426 75.8
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 1.2e-186 656.8 430 75.3
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 4.6e-186 654.8 428 76.4
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 7.9e-186 654.1 420 77.6
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 5.1e-185 651.4 420 77.1
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 1.9e-184 649.4 435 73.8
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 7.4e-184 647.5 396 80.8
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 2.2e-183 646.0 430 74.9
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 3.7e-183 645.2 429 76.2
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 4.8e-183 644.8 442 74.9
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.4e-182 643.3 429 75.1
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 9.0e-182 640.6 433 74.4
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 3.8e-180 635.2 428 76.2
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.1e-179 633.6 428 74.5
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.5e-179 632.5 409 77.0
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 1.6e-178 629.8 435 72.4
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 2.1e-178 629.4 415 77.8
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 3.6e-178 628.6 430 70.9
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 1.4e-177 626.7 375 82.4
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.8e-177 626.3 435 72.2
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 5.1e-177 624.8 394 78.7
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.5e-176 622.5 412 76.0
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 1.7e-175 619.8 433 70.9
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 8.2e-175 617.5 435 71.7
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 3.1e-174 615.5 412 76.2
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 5.3e-174 614.8 400 76.2
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.2e-173 613.6 427 73.1
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.0e-173 612.8 401 75.3
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.0e-173 612.8 401 75.3
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 7.7e-173 610.9 375 78.9
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 7.2e-171 604.4 437 69.8
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 7.2e-171 604.4 405 74.1
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 7.9e-170 600.9 403 75.2
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 1.7e-167 593.2 419 73.3
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 3.1e-166 589.0 444 68.2
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 7.7e-165 584.3 392 73.7
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 2.7e-162 575.9 377 72.7
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.4e-161 573.5 365 79.7
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 3.0e-161 572.4 409 69.7
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 4.4e-160 568.5 637 50.5
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 5.7e-160 568.2 431 66.8
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 5.9e-157 558.1 440 68.2
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 8.5e-156 554.3 540 55.6
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 2.8e-151 539.3 352 76.4
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.1e-150 535.4 443 64.6
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 9.1e-150 534.3 346 78.6
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 5.0e-148 528.5 421 65.6
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.9e-147 526.6 414 65.7
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 5.5e-147 525.0 421 64.8
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.1e-146 523.1 425 65.2
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 2.7e-146 522.7 334 76.6
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 1.4e-145 520.4 414 65.7
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 4.0e-145 518.8 338 75.7
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.7e-143 513.5 357 70.6
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 3.1e-142 509.2 424 63.2
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 5.4e-142 508.4 427 62.8
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.9e-139 500.0 352 69.9
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.5e-139 499.6 430 63.3
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 4.4e-136 488.8 397 58.9
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.3e-132 477.2 321 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 2.9e-132 476.1 395 57.7
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.3e-127 460.7 402 57.5
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 1.4e-126 457.2 414 55.3
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 9.2e-126 454.5 292 77.7
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 5.0e-124 448.7 463 55.9
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 3.3e-123 446.0 297 76.4
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 5.2e-121 438.7 288 74.7
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 8.9e-121 438.0 432 58.1
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 4.4e-120 435.6 290 76.2
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.9e-107 393.7 295 69.2
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 6.6e-100 368.6 248 73.8
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 1.1e-99 367.9 301 64.5
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.7e-95 354.0 430 46.0
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 9.3e-86 321.6 435 40.9
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 3.5e-85 319.7 226 70.8
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.5e-83 314.3 234 68.4
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 2.2e-79 300.4 304 54.3
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.3e-71 274.6 445 38.4
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 5.5e-70 269.2 170 78.8
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 5.3e-65 252.7 213 60.6
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 9.4e-54 215.3 154 74.0
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.1e-51 208.4 120 84.2
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 8.5e-47 192.2 135 68.1
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.6e-45 188.0 391 33.5
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.1e-41 173.3 101 85.1
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 2.1e-37 161.0 112 73.2
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 2.3e-36 157.5 109 70.6
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 5.2e-36 156.4 102 75.5
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 8.8e-36 155.6 108 77.8
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 8.8e-36 155.6 108 77.8
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 3.8e-31 140.2 79 82.3
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 9.8e-19 99.0 62 69.4
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 2.3e-15 87.8 46 95.7
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 4.7e-13 80.1 56 62.5
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 1.5e-11 75.1 334 23.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 5.8e-11 73.2 47 80.9
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-08 65.1 78 48.7


User provided reference genes

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