Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 1.7e-182 642.5 317 100.0
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 2.3e-134 482.6 323 76.2
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 2.0e-122 443.0 320 71.6
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 6.4e-121 438.0 318 68.6
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 8.3e-121 437.6 324 67.9
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 1.0e-118 430.6 317 68.8
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 7.3e-117 424.5 312 65.7
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 9.5e-117 424.1 324 67.6
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 4.7e-116 421.8 317 65.6
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.3e-115 419.5 315 68.3
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 3.1e-115 419.1 319 67.4
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 4.0e-115 418.7 315 64.8
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.6e-114 416.0 315 68.3
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 2.6e-114 416.0 315 65.4
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 9.8e-114 414.1 315 64.1
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 1.3e-113 413.7 314 67.2
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 2.2e-113 412.9 286 68.2
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 8.3e-113 411.0 324 63.0
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 1.1e-112 410.6 312 67.6
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 1.1e-112 410.6 314 65.3
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 1.1e-112 410.6 334 64.4
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 2.4e-112 409.5 316 63.9
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 9.2e-112 407.5 316 63.6
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 2.1e-111 406.4 316 64.6
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 2.1e-111 406.4 420 55.5
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 2.7e-111 406.0 312 66.7
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 2.7e-111 406.0 320 64.7
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 4.6e-111 405.2 316 64.9
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 7.8e-111 404.4 296 68.6
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 1.3e-110 403.7 314 65.6
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 2.3e-110 402.9 315 64.8
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 3.0e-110 402.5 314 62.7
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 3.9e-110 402.1 316 64.6
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 5.1e-110 401.7 317 65.3
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 6.6e-110 401.4 312 66.0
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 6.6e-110 401.4 314 65.6
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 1.1e-109 400.6 317 65.3
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 1.1e-109 400.6 317 65.3
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 5.6e-109 398.3 312 66.0
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 7.3e-109 397.9 314 63.1
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.6e-108 396.7 318 64.2
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 2.8e-108 396.0 318 64.2
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 3.6e-108 395.6 318 65.1
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 8.1e-108 394.4 313 64.9
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 8.1e-108 394.4 313 64.9
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 1.1e-107 394.0 315 64.8
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 1.1e-107 394.0 335 60.6
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 1.1e-107 394.0 255 73.3
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 2.3e-107 392.9 315 63.8
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 8.9e-107 391.0 333 60.4
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 1.2e-106 390.6 314 62.1
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 1.5e-106 390.2 311 63.7
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 2.6e-106 389.4 313 64.9
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 2.9e-105 386.0 303 63.0
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 3.8e-105 385.6 322 60.6
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 4.9e-105 385.2 315 64.4
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.4e-104 382.9 319 62.1
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 4.1e-104 382.1 321 61.4
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 4.1e-104 382.1 315 61.6
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 9.2e-104 380.9 319 61.8
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 3.5e-103 379.0 341 58.1
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 3.9e-102 375.6 315 61.9
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 4.3e-101 372.1 314 60.2
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 1.6e-100 370.2 316 59.2
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 1.8e-99 366.7 311 62.1
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 1.2e-98 364.0 321 59.2
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 1.5e-98 363.6 330 60.0
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 4.4e-98 362.1 279 64.5
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 2.2e-97 359.8 324 58.6
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 2.2e-97 359.8 295 61.4
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 8.4e-97 357.8 301 62.1
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.1e-96 357.5 315 61.0
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 1.1e-96 357.5 283 62.5
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.1e-96 357.5 317 59.6
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 5.4e-96 355.1 315 59.0
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 1.0e-94 350.9 301 59.5
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 1.3e-94 350.5 279 65.9
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 5.1e-94 348.6 282 62.8
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 5.1e-94 348.6 315 57.8
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 6.6e-94 348.2 299 58.9
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 6.6e-94 348.2 271 65.3
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 3.3e-93 345.9 279 64.9
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 3.3e-93 345.9 320 61.2
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 2.8e-92 342.8 397 49.6
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.1e-91 340.9 241 67.2
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 1.1e-91 340.9 275 64.4
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 1.8e-91 340.1 311 57.2
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 1.8e-91 340.1 258 63.6
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 4.0e-91 339.0 224 70.5
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.5e-90 337.0 264 61.7
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 7.6e-90 334.7 274 62.8
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.1e-88 330.9 272 59.9
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 4.2e-88 328.9 327 56.3
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 9.3e-88 327.8 298 55.4
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 3.6e-84 315.8 241 61.8
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 4.8e-84 315.5 307 56.4
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 9.0e-83 311.2 271 56.1
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 2.3e-78 296.6 246 61.8
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 3.9e-78 295.8 244 60.2
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 2.7e-71 273.1 265 52.1
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 3.0e-70 269.6 319 48.6
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 1.4e-64 250.8 157 75.2
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 4.3e-61 239.2 239 53.1
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 5.3e-59 232.3 247 47.4
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 7.7e-58 228.4 252 51.2
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 5.0e-57 225.7 252 48.4
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 8.5e-57 224.9 244 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 5.1e-54 215.7 246 43.9
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 6.3e-52 208.8 155 69.7
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 6.3e-52 208.8 155 71.0
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.0e-49 201.4 165 67.3
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 6.5e-49 198.7 130 69.2
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 1.4e-43 181.0 153 64.1
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 1.8e-43 180.6 193 52.3
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 9.1e-43 178.3 154 64.9
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 1.9e-40 170.6 131 69.5
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 2.5e-32 143.7 91 73.6
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 5.2e-30 136.0 148 45.3
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 4.4e-29 132.9 102 59.8
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 1.6e-26 124.4 74 75.7
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 1.6e-26 124.4 75 70.7
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 2.3e-25 120.6 132 50.8
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 5.5e-24 115.9 163 41.7
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.8e-23 113.6 132 47.0
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.8e-22 110.9 256 29.7
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 6.8e-22 109.0 105 49.5
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 9.8e-21 105.1 107 59.8
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.3e-20 104.8 107 58.9
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 4.9e-20 102.8 84 53.6
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 5.0e-17 92.8 96 60.4
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.3e-16 90.1 73 65.8
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 1.2e-15 88.2 252 27.4
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.1e-15 87.4 73 64.4
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 2.3e-14 84.0 116 49.1
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 3.0e-14 83.6 189 31.7
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 8.9e-14 82.0 48 77.1
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.2e-13 81.6 96 49.0
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 2.6e-13 80.5 236 30.1
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 1.5e-08 64.7 242 26.0
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 1.5e-08 64.7 232 27.6
Aa31LG5G14470 Aethionema arabicum HOM05D006013 ORTHO05D007383 1.9e-08 64.3 314 24.5
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 3.3e-08 63.5 277 26.0
arahy.Tifrunner.gnm1.ann1.779YCA Arachis hypogaea HOM05D006013 ORTHO05D007383 5.6e-08 62.8 257 26.8
arahy.Tifrunner.gnm1.ann1.3D4EN7 Arachis hypogaea HOM05D006013 ORTHO05D007383 9.5e-08 62.0 257 26.5
CARHR078010 Cardamine hirsuta HOM05D006013 ORTHO05D007383 9.5e-08 62.0 253 26.1
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 1.2e-07 61.6 328 25.6
Sc25g0004990 Simmondsia chinensis HOM05D006013 ORTHO05D007383 1.6e-07 61.2 257 25.7
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 2.1e-07 60.8 241 25.7
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 4.7e-07 59.7 62 51.6
Glyma.19G112500 Glycine max HOM05D006013 ORTHO05D007383 4.7e-07 59.7 261 25.7
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 6.2e-07 59.3 316 25.3
Nitab4.5_0000626g0030 Nicotiana tabacum HOM05D006013 ORTHO05D007383 6.2e-07 59.3 236 26.3
Phvul.001G111200 Phaseolus vulgaris HOM05D006013 ORTHO05D007383 8.0e-07 58.9 262 24.8
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 1.8e-06 57.8 245 25.3
Ca_08269_v3 Cicer arietinum L. HOM05D006013 ORTHO05D007383 4.0e-06 56.6 258 24.8
FvH4_6g36141 Fragaria vesca HOM05D002283 ORTHO05D005725 8.9e-06 55.5 83 44.6


User provided reference genes

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