Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 8.2e-70 266.9 134 100.0
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.5e-58 229.6 133 82.7
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 5.5e-58 227.6 133 82.7
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.1e-57 225.7 134 83.6
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 2.7e-57 225.3 134 82.8
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 3.6e-57 224.9 134 84.3
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 3.6e-57 224.9 133 83.5
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 8.0e-57 223.8 127 85.8
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 1.0e-56 223.4 127 85.8
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.4e-56 223.0 134 79.9
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.4e-56 223.0 133 81.2
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 5.7e-55 217.6 130 82.3
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 7.5e-55 217.2 127 81.9
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 7.5e-55 217.2 127 82.7
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.3e-54 216.5 127 80.3
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.2e-54 215.7 118 87.3
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 2.8e-54 215.3 127 83.5
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.8e-54 215.3 127 81.9
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 3.7e-54 214.9 118 87.3
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 4.8e-54 214.5 127 80.3
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.8e-54 214.5 127 82.7
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 8.3e-54 213.8 132 79.5
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 8.3e-54 213.8 136 79.4
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.1e-53 213.4 127 82.7
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 3.1e-53 211.8 127 79.5
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 5.4e-53 211.1 127 78.7
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 5.4e-53 211.1 115 86.1
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 5.4e-53 211.1 121 83.5
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 5.4e-53 211.1 122 82.0
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 7.0e-53 210.7 152 69.7
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.2e-52 209.9 127 78.0
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.2e-52 209.9 133 78.9
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.6e-52 209.5 127 80.3
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 2.0e-52 209.1 130 77.7
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 2.0e-52 209.1 127 81.1
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 2.0e-52 209.1 133 76.7
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 2.0e-52 209.1 133 76.7
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.7e-52 208.8 127 78.0
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 7.7e-52 207.2 126 78.6
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.0e-51 206.8 126 78.6
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.0e-51 206.8 127 76.4
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.0e-51 206.8 127 76.4
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 1.7e-51 206.1 127 75.6
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.2e-51 205.7 127 77.2
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 5.0e-51 204.5 126 77.8
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 5.0e-51 204.5 126 77.8
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 5.0e-51 204.5 126 77.8
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 5.0e-51 204.5 127 79.5
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 8.5e-51 203.8 127 75.6
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.1e-50 203.4 126 77.8
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 1.5e-50 203.0 126 77.8
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 1.5e-50 203.0 126 77.8
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 1.5e-50 203.0 126 77.8
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 1.5e-50 203.0 126 77.0
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 3.2e-50 201.8 126 77.8
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.2e-50 201.8 127 74.8
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 4.2e-50 201.4 148 68.9
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.2e-50 201.4 121 77.7
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 4.2e-50 201.4 127 75.6
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 7.2e-50 200.7 126 76.2
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 7.2e-50 200.7 121 78.5
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 2.1e-49 199.1 126 74.6
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 2.1e-49 199.1 113 83.2
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 2.1e-49 199.1 113 82.3
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 2.1e-49 199.1 118 78.0
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 4.7e-49 198.0 125 77.6
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 4.7e-49 198.0 123 76.4
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 4.7e-49 198.0 147 69.4
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 8.0e-49 197.2 127 76.4
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.0e-49 197.2 127 76.4
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.0e-48 196.8 127 76.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.0e-48 196.8 127 76.4
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.0e-48 196.8 114 78.9
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.4e-48 196.4 143 68.5
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.3e-48 195.7 114 78.9
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.3e-48 195.7 114 78.9
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 4.0e-48 194.9 134 71.6
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 4.0e-48 194.9 125 75.2
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 5.2e-48 194.5 134 71.6
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 6.8e-48 194.1 117 78.6
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 8.8e-48 193.7 125 75.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 2.0e-47 192.6 133 75.2
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 5.7e-47 191.0 117 77.8
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.5e-47 190.7 128 73.4
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 7.5e-47 190.7 117 80.3
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 9.8e-47 190.3 117 78.6
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.3e-46 189.9 120 77.5
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.3e-46 189.9 125 75.2
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.3e-46 189.9 115 80.0
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 2.8e-46 188.7 117 79.5
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 8.3e-46 187.2 117 76.9
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.1e-45 186.8 135 71.1
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 1.1e-45 186.8 117 76.1
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.4e-45 186.4 124 73.4
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.8e-45 186.0 117 76.1
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.4e-45 185.7 121 76.9
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 3.1e-45 185.3 121 76.0
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 4.1e-45 184.9 119 73.1
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 7.0e-45 184.1 114 76.3
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.7e-44 182.2 117 70.9
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 2.3e-43 179.1 114 74.6
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 8.6e-43 177.2 117 74.4
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 7.2e-42 174.1 107 74.8
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.6e-41 172.9 122 70.5
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 3.6e-41 171.8 125 68.8
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 5.2e-40 167.9 127 62.2
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 4.9e-30 134.8 88 75.0
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 4.6e-28 128.3 83 75.9
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.3e-27 126.7 73 82.2
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 1.2e-25 120.2 68 79.4
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 2.1e-25 119.4 72 73.6
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.1e-25 119.4 112 50.0
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 2.1e-25 119.4 75 73.3
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 1.1e-24 117.1 67 82.1
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 2.3e-24 115.9 68 76.5
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 3.1e-24 115.5 68 75.0
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 3.1e-24 115.5 67 77.6
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 8.9e-24 114.0 112 48.2
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 8.9e-24 114.0 112 50.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 4.4e-23 111.7 68 76.5
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.4e-23 111.7 77 68.8
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.7e-22 109.8 66 83.3
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 3.2e-21 105.5 66 77.3
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 4.1e-21 105.1 88 63.6
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.1e-20 102.8 58 79.3
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-18 97.1 66 75.8
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.9e-18 96.3 114 42.1
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 2.5e-18 95.9 60 75.0
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.1e-17 92.8 57 82.5
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 6.2e-17 91.3 71 62.0
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.1e-16 90.5 59 76.3
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 1.1e-16 90.5 108 46.3
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.4e-16 90.1 57 77.2
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 1.7e-14 83.2 63 63.5
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 2.2e-14 82.8 75 57.3
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 4.6e-12 75.1 51 72.5
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 4.6e-12 75.1 51 72.5
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 7.8e-12 74.3 101 40.6
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.0e-11 73.9 60 65.0
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.7e-11 73.2 51 70.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 2.8e-09 65.9 46 67.4
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 5.8e-07 58.2 76 43.4


User provided reference genes

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