Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 3.9e-60 234.6 117 100.0
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 2.6e-19 99.0 93 54.8
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 3.7e-18 95.1 85 61.2
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 8.3e-18 94.0 95 52.6
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 1.9e-17 92.8 95 51.6
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 3.2e-17 92.0 87 54.0
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 3.2e-17 92.0 60 68.3
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 4.1e-17 91.7 95 52.6
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 2.7e-16 89.0 90 54.4
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 1.3e-15 86.7 93 49.5
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 5.1e-15 84.7 92 54.3
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 6.6e-15 84.3 81 55.6
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 3.3e-14 82.0 92 54.3
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 5.6e-14 81.3 91 48.4
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 4.7e-13 78.2 93 50.5
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 4.7e-13 78.2 89 48.3
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 6.2e-13 77.8 96 46.9
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 2.3e-12 75.9 82 47.6
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 4.0e-12 75.1 40 80.0
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 6.8e-12 74.3 58 60.3
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 1.5e-11 73.2 92 48.9
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 1.5e-11 73.2 93 39.8
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 5.8e-11 71.2 51 56.9
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 5.8e-11 71.2 86 47.7
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 7.5e-11 70.9 103 43.7
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 7.5e-11 70.9 103 43.7
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 7.5e-11 70.9 47 63.8
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 9.9e-11 70.5 58 58.6
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 9.9e-11 70.5 70 48.6
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 1.3e-10 70.1 58 55.2
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.3e-10 70.1 94 47.9
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 1.3e-10 70.1 87 49.4
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 2.2e-10 69.3 45 62.2
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 2.2e-10 69.3 84 45.2
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 2.2e-10 69.3 48 62.5
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 2.2e-10 69.3 59 57.6
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 2.9e-10 68.9 93 45.2
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 2.9e-10 68.9 53 64.2
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 2.9e-10 68.9 51 54.9
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 2.9e-10 68.9 48 62.5
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 2.9e-10 68.9 40 70.0
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 3.7e-10 68.6 92 40.2
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 3.7e-10 68.6 87 43.7
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 4.9e-10 68.2 102 47.1
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 4.9e-10 68.2 67 50.7
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 8.3e-10 67.4 51 54.9
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 8.3e-10 67.4 53 62.3
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 8.3e-10 67.4 51 58.8
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 8.3e-10 67.4 46 60.9
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 1.1e-09 67.0 47 61.7
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 1.1e-09 67.0 42 71.4
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 1.4e-09 66.6 87 43.7
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 1.4e-09 66.6 87 43.7
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 1.9e-09 66.2 89 40.4
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 3.2e-09 65.5 40 67.5
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 3.2e-09 65.5 88 46.6
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 3.2e-09 65.5 88 46.6
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 3.2e-09 65.5 88 46.6
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 3.2e-09 65.5 64 48.4
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 4.1e-09 65.1 42 69.0
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 4.1e-09 65.1 42 69.0
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 4.1e-09 65.1 42 69.0
EL10Ac8g19876 Beta vulgaris HOM05D007852 ORTHO05D009916 5.4e-09 64.7 65 49.2
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 5.4e-09 64.7 85 42.4
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 7.1e-09 64.3 85 45.9
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 7.1e-09 64.3 50 58.0
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 7.1e-09 64.3 85 43.5
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 9.2e-09 63.9 91 46.2
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 2.1e-08 62.8 38 68.4
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 4.6e-08 61.6 40 67.5
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 7.8e-08 60.8 40 62.5
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 7.8e-08 60.8 40 57.5
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 1.0e-07 60.5 84 39.3
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 2.3e-07 59.3 45 53.3
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 3.0e-07 58.9 74 40.5
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 3.0e-07 58.9 93 36.6
Mapoly0042s0091 Marchantia polymorpha HOM05D007852 ORTHO05D009916 8.6e-07 57.4 42 57.1
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 8.6e-07 57.4 43 58.1
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 1.1e-06 57.0 84 38.1
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 1.5e-06 56.6 40 55.0


User provided reference genes

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