Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 8.7e-51 203.4 105 100.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.8e-32 142.5 108 75.0
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 9.4e-29 130.2 108 64.8
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.4e-29 130.2 97 69.1
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.6e-28 129.4 104 72.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.5e-26 122.9 101 64.4
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 7.5e-26 120.6 101 64.4
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.7e-25 119.4 103 64.1
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 6.3e-25 117.5 92 65.2
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 8.2e-25 117.1 104 63.5
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.1e-24 115.2 103 66.0
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.6e-23 112.8 98 62.2
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.5e-23 111.3 104 62.5
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 5.9e-23 110.9 85 71.8
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.9e-23 110.9 104 62.5
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.7e-23 110.5 104 59.6
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.7e-22 109.4 97 60.8
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.1e-21 106.7 97 60.8
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.5e-21 106.3 98 61.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-21 105.1 71 69.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 4.2e-21 104.8 103 60.2
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.5e-21 104.4 118 53.4
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.1e-20 102.4 103 58.3
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 2.7e-20 102.1 110 57.3
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.7e-20 102.1 98 57.1
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 4.7e-20 101.3 89 59.6
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.4e-19 99.8 107 50.5
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.4e-19 99.8 95 58.9
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.4e-19 99.8 87 54.0
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.8e-19 99.4 108 55.6
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.3e-19 99.0 92 60.9
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 2.3e-19 99.0 89 59.6
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.3e-19 99.0 88 64.8
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.0e-19 98.6 89 59.6
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 4.0e-19 98.2 90 58.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.8e-19 97.4 88 62.5
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 8.8e-19 97.1 74 64.9
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.2e-18 96.7 89 58.4
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.5e-18 96.3 77 64.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.5e-18 96.3 91 52.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.0e-18 95.9 100 55.0
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 3.4e-18 95.1 83 53.0
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.4e-18 95.1 113 51.3
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 5.7e-18 94.4 101 55.4
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.5e-18 94.0 87 59.8
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 7.5e-18 94.0 82 57.3
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 7.5e-18 94.0 103 50.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 9.8e-18 93.6 100 51.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 9.8e-18 93.6 83 59.0
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 9.8e-18 93.6 83 59.0
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.3e-17 93.2 110 49.1
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.8e-17 92.0 105 52.4
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.8e-17 92.0 84 52.4
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 3.7e-17 91.7 83 57.8
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 3.7e-17 91.7 106 57.5
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 3.7e-17 91.7 78 61.5
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.3e-17 90.9 103 50.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.1e-16 90.1 83 54.2
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.4e-16 89.7 84 53.6
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.4e-16 89.7 88 55.7
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 2.4e-16 89.0 69 59.4
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 4.1e-16 88.2 82 59.8
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.0e-16 87.4 84 58.3
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 9.1e-16 87.0 110 47.3
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 9.1e-16 87.0 94 58.5
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 9.1e-16 87.0 68 57.4
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.2e-15 86.7 82 54.9
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.2e-15 86.7 85 50.6
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.6e-15 86.3 93 53.8
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 2.7e-15 85.5 70 60.0
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 3.5e-15 85.1 85 55.3
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 3.5e-15 85.1 85 55.3
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 3.5e-15 85.1 99 50.5
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.5e-15 84.7 104 48.1
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 4.5e-15 84.7 96 50.0
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 4.5e-15 84.7 92 56.5
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 4.5e-15 84.7 72 51.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 4.5e-15 84.7 107 49.5
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 5.9e-15 84.3 88 55.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.7e-15 84.0 103 51.5
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 7.7e-15 84.0 76 52.6
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 7.7e-15 84.0 87 55.2
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 7.7e-15 84.0 85 48.2
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.7e-15 84.0 99 54.5
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.7e-15 84.0 85 54.1
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 7.7e-15 84.0 60 66.7
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.0e-14 83.6 102 48.0
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.0e-14 83.6 87 59.8
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.3e-14 83.2 105 45.7
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.3e-14 83.2 99 54.5
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.3e-14 83.2 81 58.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.7e-14 82.8 79 54.4
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.7e-14 82.8 72 55.6
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 2.2e-14 82.4 90 45.6
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.2e-14 82.4 89 49.4
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.2e-14 82.4 107 53.3
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.8e-14 81.6 106 46.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.8e-14 81.6 108 46.3
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.8e-14 81.6 108 46.3
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.8e-14 81.6 59 62.7
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.8e-14 81.6 107 53.3
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 6.5e-14 80.9 107 49.5
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-13 80.1 100 51.0
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.1e-13 80.1 77 50.6
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.5e-13 79.7 97 44.3
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.5e-13 79.7 99 53.5
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.5e-13 79.7 103 49.5
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.5e-13 79.7 78 55.1
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.9e-13 79.3 98 45.9
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.9e-13 79.3 60 65.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 2.5e-13 79.0 82 56.1
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 2.5e-13 79.0 76 46.1
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-13 78.6 108 45.4
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.2e-13 78.6 84 61.9
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.2e-13 78.2 84 52.4
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 4.2e-13 78.2 85 52.9
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 4.2e-13 78.2 95 48.4
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 5.5e-13 77.8 45 73.3
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 7.2e-13 77.4 81 51.9
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.2e-12 76.6 98 45.9
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-12 76.6 84 60.7
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.7e-12 75.5 77 49.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.7e-12 75.5 105 41.0
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 3.6e-12 75.1 72 51.4
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 3.6e-12 75.1 72 51.4
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 3.6e-12 75.1 71 54.9
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 8.0e-12 73.9 81 49.4
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.0e-11 73.6 50 68.0
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.4e-11 73.2 79 45.6
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.0e-11 72.0 102 47.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 3.0e-11 72.0 86 52.3
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 4.0e-11 71.6 97 40.2
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 8.8e-11 70.5 76 50.0
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.2e-10 70.1 67 55.2
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.2e-10 70.1 96 47.9
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.5e-10 69.7 60 58.3
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 2.0e-10 69.3 103 41.7
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.4e-10 68.2 56 60.7
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.8e-10 67.0 71 53.5
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 9.8e-10 67.0 91 49.5
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.3e-09 66.6 98 43.9
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.2e-09 65.9 65 53.8
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.7e-09 65.1 67 53.7
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.9e-09 64.7 85 42.4
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 6.3e-09 64.3 43 74.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 8.3e-09 63.9 76 47.4
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.8e-08 62.8 94 44.7
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 7.0e-08 60.8 75 45.3
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 4.5e-07 58.2 60 53.3
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 6.6e-06 54.3 58 43.1


User provided reference genes

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