Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.7e-156 555.8 415 100.0
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.3e-92 344.4 192 90.1
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.8e-84 316.6 189 82.0
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 4.0e-83 312.8 186 82.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 3.4e-82 309.7 187 81.3
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 7.6e-82 308.5 186 81.2
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.3e-78 297.7 185 81.1
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 6.9e-75 285.4 189 73.5
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.4e-74 283.1 192 73.4
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.2e-73 280.4 185 73.0
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.9e-73 280.0 185 73.0
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 6.5e-73 278.9 192 71.9
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.5e-73 278.5 193 70.5
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.4e-72 277.7 193 69.9
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.5e-72 276.9 191 70.2
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 4.2e-72 276.2 186 72.0
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.5e-72 275.8 185 72.4
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 3.6e-71 273.1 189 69.8
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.3e-70 271.2 210 66.7
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.3e-70 270.4 190 68.4
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 6.7e-70 268.9 185 69.2
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 8.7e-70 268.5 186 69.9
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 1.1e-69 268.1 186 69.4
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.5e-69 267.7 188 69.1
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.1e-67 261.5 192 69.3
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.4e-67 260.4 184 67.4
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.1e-67 260.0 187 70.1
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 4.1e-67 259.6 189 68.3
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 2.0e-66 257.3 186 67.2
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.6e-66 256.9 188 69.1
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.6e-66 256.9 189 67.7
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 5.9e-66 255.8 193 64.8
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 5.9e-66 255.8 186 67.2
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.0e-65 255.0 186 66.7
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.7e-65 254.2 187 69.0
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.8e-65 253.1 184 69.0
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 8.5e-65 251.9 196 65.8
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 8.5e-65 251.9 186 66.7
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.1e-64 251.5 186 66.7
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-64 251.5 192 64.6
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.9e-64 250.8 187 70.6
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.5e-64 250.4 187 64.2
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 3.2e-64 250.0 189 68.3
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 3.2e-64 250.0 186 65.6
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 4.2e-64 249.6 186 66.1
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 4.2e-64 249.6 183 69.4
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.2e-64 249.6 183 69.4
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.2e-64 249.6 184 68.5
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 9.4e-64 248.4 183 68.3
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.2e-63 248.1 188 64.4
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.6e-63 247.7 186 67.2
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 2.1e-63 247.3 190 66.3
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.1e-63 247.3 188 66.0
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.7e-63 246.9 189 65.1
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 6.1e-63 245.7 189 64.0
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.0e-62 245.0 192 65.6
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 2.3e-62 243.8 191 63.4
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 3.9e-62 243.0 188 64.4
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 6.7e-62 242.3 189 65.1
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.0e-61 240.7 186 64.5
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.3e-61 240.0 188 63.8
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 3.3e-61 240.0 189 65.1
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 3.3e-61 240.0 193 62.2
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 3.7e-60 236.5 192 61.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.8e-60 236.1 189 65.1
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 8.2e-60 235.3 187 62.0
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 8.2e-60 235.3 187 63.1
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.4e-59 234.6 187 64.2
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.4e-59 233.8 193 62.7
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.4e-59 233.8 185 63.2
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 3.1e-59 233.4 193 60.1
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 4.1e-59 233.0 188 62.2
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 4.1e-59 233.0 187 62.6
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.0e-58 230.7 186 59.7
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.0e-58 230.7 189 61.9
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.6e-58 230.3 188 62.2
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 4.5e-58 229.6 193 60.6
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.5e-58 229.6 188 63.8
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.7e-57 227.6 187 60.4
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 5.0e-57 226.1 185 60.5
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 6.5e-57 225.7 194 60.3
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 8.5e-57 225.3 191 58.6
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.1e-56 224.9 198 61.1
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.5e-56 223.8 187 62.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 9.4e-56 221.9 189 57.7
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 9.4e-56 221.9 192 58.3
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 2.1e-55 220.7 201 57.2
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.7e-55 219.5 192 57.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.0e-54 218.4 188 57.4
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.8e-54 217.6 187 59.9
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.9e-54 216.5 192 58.9
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 6.7e-54 215.7 187 60.4
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 8.8e-54 215.3 155 67.1
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 8.8e-54 215.3 195 59.0
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.5e-53 214.5 186 58.1
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.5e-53 214.5 187 57.2
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 7.4e-53 212.2 189 59.3
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 9.7e-53 211.8 164 62.8
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.8e-52 210.3 184 56.5
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.9e-49 200.3 180 55.0
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.5e-48 198.0 187 57.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 1.9e-48 197.6 195 52.8
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 3.2e-48 196.8 192 53.6
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 4.7e-47 193.0 194 57.7
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.0e-46 191.8 185 54.1
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 3.3e-45 186.8 187 51.9
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.2e-44 184.1 187 50.8
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 6.3e-44 182.6 196 55.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.4e-43 180.6 190 55.3
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.1e-43 180.3 182 51.6
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 5.3e-43 179.5 190 53.7
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.0e-43 179.1 196 54.1
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 7.0e-43 179.1 196 52.6
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 7.0e-43 179.1 196 52.6
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 9.1e-43 178.7 201 51.7
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.2e-42 178.3 196 53.6
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.6e-42 177.9 197 53.8
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 3.5e-42 176.8 203 50.7
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 5.9e-42 176.0 196 49.5
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.9e-41 173.7 191 53.9
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.9e-41 173.7 191 53.9
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 5.0e-41 172.9 192 54.7
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 5.0e-41 172.9 192 54.7
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 5.0e-41 172.9 192 54.7
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 5.0e-41 172.9 192 51.0
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.5e-40 171.4 189 51.9
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 9.4e-40 168.7 173 55.5
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.1e-39 167.5 200 48.0
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.0e-38 165.2 186 51.1
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.0e-38 163.3 128 64.8
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 5.2e-38 162.9 170 52.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.2e-36 157.5 196 50.5
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 2.2e-36 157.5 128 60.2
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.4e-35 154.8 191 49.2
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.4e-35 154.8 191 49.2
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.4e-35 154.1 191 48.7
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 7.0e-35 152.5 196 49.0
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.6e-34 151.4 192 48.4
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.9e-33 147.1 187 49.7
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 5.0e-33 146.4 131 56.5
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.1e-32 145.2 189 48.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.1e-32 145.2 194 45.9
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 2.5e-32 144.1 110 61.8
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.2e-31 141.7 177 45.8
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 6.1e-31 139.4 206 43.2
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 8.8e-30 135.6 194 40.7
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.2e-29 135.2 130 50.8
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.2e-28 131.0 206 40.8
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 5.4e-27 126.3 200 42.5
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.6e-26 124.8 194 42.3
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.9e-24 117.9 96 61.5
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 5.6e-24 116.3 89 59.6
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 8.9e-22 109.0 88 65.9
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 6.4e-20 102.8 122 45.9
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.2e-19 100.5 80 60.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 3.0e-17 94.0 172 41.9
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 5.0e-17 93.2 197 33.0
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 6.4e-12 76.3 51 62.7
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 8.3e-12 75.9 51 62.7
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 8.3e-12 75.9 51 62.7
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 4.1e-11 73.6 51 60.8
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.6e-10 71.6 87 47.1
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 1.3e-09 68.6 161 29.8


User provided reference genes

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