Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 5.5e-88 328.6 319 100.0
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.1e-85 320.9 319 80.9
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 5.0e-81 305.4 319 84.6
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.8e-78 297.0 319 94.0
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 7.7e-74 281.6 319 72.1
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.3e-73 280.8 320 73.8
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.4e-72 277.3 248 87.9
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 2.5e-72 276.6 248 88.7
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 2.5e-72 276.6 248 88.7
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 7.2e-72 275.0 317 72.2
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 7.2e-72 275.0 318 73.0
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 7.2e-72 275.0 318 72.0
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.2e-71 274.2 248 87.1
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 2.7e-71 273.1 249 90.4
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 6.1e-71 271.9 325 70.5
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 7.9e-71 271.6 327 69.7
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.9e-70 269.2 249 87.6
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.9e-70 269.2 249 88.0
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 5.1e-70 268.9 249 87.6
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.1e-70 268.9 249 87.6
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.1e-70 268.9 249 87.6
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 1.1e-69 267.7 249 88.4
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.1e-69 267.7 318 71.1
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.0e-69 266.9 325 69.2
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 2.0e-69 266.9 317 71.3
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 3.3e-69 266.2 248 85.1
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 5.7e-69 265.4 250 86.8
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 7.4e-69 265.0 248 84.7
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 7.4e-69 265.0 319 70.5
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 7.4e-69 265.0 248 85.1
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.8e-68 263.1 318 70.4
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 6.3e-68 261.9 248 86.7
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 6.3e-68 261.9 248 86.7
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.4e-67 260.8 317 84.5
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 1.4e-67 260.8 248 86.3
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.4e-67 260.8 248 85.5
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 1.8e-67 260.4 318 69.5
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.8e-67 260.4 248 85.1
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.8e-67 260.4 317 72.6
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.8e-67 260.4 319 69.9
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.4e-67 260.0 248 85.9
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 3.1e-67 259.6 248 85.1
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 3.1e-67 259.6 249 86.7
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 5.3e-67 258.8 143 81.1
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 7.0e-67 258.5 248 85.5
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 7.0e-67 258.5 248 85.5
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 7.0e-67 258.5 248 84.3
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 7.0e-67 258.5 248 85.9
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 7.0e-67 258.5 319 74.9
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 1.2e-66 257.7 317 74.1
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.6e-66 257.3 248 85.5
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.6e-66 257.3 248 85.5
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.6e-66 257.3 248 85.5
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.6e-66 257.3 143 83.2
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.6e-66 257.3 248 85.5
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 2.0e-66 256.9 248 85.5
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 4.5e-66 255.8 317 75.7
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 4.5e-66 255.8 143 79.7
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 5.9e-66 255.4 249 85.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 5.9e-66 255.4 319 69.0
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.0e-65 254.6 244 87.3
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.3e-65 254.2 317 71.3
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.3e-65 254.2 317 69.1
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 1.7e-65 253.8 244 86.9
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 2.9e-65 253.1 244 86.1
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 5.0e-65 252.3 319 66.5
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 8.5e-65 251.5 317 68.5
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 8.5e-65 251.5 317 68.5
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.1e-64 251.1 143 81.8
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 5.5e-64 248.8 319 75.2
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 1.2e-63 247.7 317 72.2
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.6e-63 247.3 143 81.1
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 1.6e-63 247.3 317 67.5
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 3.6e-63 246.1 144 77.8
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 6.1e-63 245.4 143 78.3
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 8.0e-63 245.0 146 78.1
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 8.0e-63 245.0 248 82.7
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 76.9
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 76.9
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 3.0e-62 243.0 143 76.9
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 4.0e-62 242.7 143 76.9
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 5.2e-62 242.3 143 77.6
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 5.2e-62 242.3 143 77.6
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 5.2e-62 242.3 143 77.6
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 5.2e-62 242.3 143 76.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.2e-62 242.3 248 81.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.7e-62 241.9 248 81.0
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 6.7e-62 241.9 248 81.5
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.1e-61 241.1 143 76.9
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.1e-61 241.1 143 74.8
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.6e-61 240.0 144 76.4
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 74.8
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 3.3e-61 239.6 144 77.1
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.4e-61 239.2 144 75.7
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 74.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 74.8
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.8e-60 236.5 144 75.0
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.8e-60 236.5 144 75.0
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 75.5
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 74.8
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 4.8e-60 235.7 144 74.3
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.4e-59 234.2 317 71.6
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.8e-59 233.8 143 74.1
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 2.9e-57 226.5 144 70.8
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 3.2e-56 223.0 143 69.9
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.0e-49 201.4 276 71.0
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 5.5e-48 195.7 144 61.1
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 3.4e-45 186.4 144 59.0
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 5.7e-45 185.7 144 57.6
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.7e-44 184.1 115 70.4
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.8e-44 183.3 143 60.1
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 6.3e-44 182.2 317 64.0
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.4e-43 181.0 143 60.8
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 9.2e-43 178.3 140 57.1
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.7e-39 166.0 106 73.6
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.8e-38 164.1 143 57.3
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.8e-35 154.1 142 52.1
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.3e-33 147.9 111 63.1
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.1e-32 144.8 110 60.0
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.8e-30 137.5 113 57.5
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.6e-29 133.7 114 59.6
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 7.5e-29 132.1 132 48.5
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.2e-21 108.2 143 42.0
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.0e-17 93.6 208 63.5
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.6e-16 89.4 143 37.1
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 3.7e-12 76.6 120 40.8
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 9.2e-11 72.0 124 37.9
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 6.6e-09 65.9 54 59.3
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 2.1e-07 60.8 36 66.7


User provided reference genes

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