Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 2.0e-23 111.7 60 100.0
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 7.1e-13 76.6 57 68.4
Manes.16G022400 Manihot esculenta HOM05D007756 ORTHO05D009403 1.6e-12 75.5 57 75.4
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 2.7e-12 74.7 57 68.4
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.3e-11 72.4 57 64.9
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 1.7e-11 72.0 60 66.7
VMungo0251G2707 Vigna mungo HOM05D007756 ORTHO05D009403 2.3e-11 71.6 53 77.4
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 1.5e-10 68.9 49 75.5
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.5e-10 68.9 50 70.0
Phvul.002G223500 Phaseolus vulgaris HOM05D007756 ORTHO05D009403 1.5e-10 68.9 53 73.6
Gohir.A05G164200 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.9e-10 68.6 57 61.4
Gorai.009G172100 Gossypium raimondii HOM05D007756 ORTHO05D009403 1.9e-10 68.6 57 61.4
Cfa000373 Carpinus fangiana HOM05D007756 ORTHO05D009403 3.3e-10 67.8 61 68.9
Gohir.A06G123802 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.3e-10 67.8 51 66.7
Gohir.D06G128600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.3e-10 67.4 51 66.7
Hma1.2p1_0144F.1_g064970 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 7.3e-10 66.6 53 69.8
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 9.5e-10 66.2 62 61.3
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 1.2e-09 65.9 49 71.4
Gohir.D05G167100 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.2e-09 65.9 57 59.6
Hma1.2p1_0144F.1_g064960 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 1.2e-09 65.9 52 73.1
TAR679G0001 Trochodendron aralioides HOM05D007756 ORTHO05D009403 1.2e-09 65.9 59 64.4
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 1.6e-09 65.5 51 72.5
Nn1g06699 Nelumbo nucifera HOM05D007756 ORTHO05D009403 2.8e-09 64.7 56 64.3
PGSC0003DMG400022450 Solanum tuberosum HOM05D007756 ORTHO05D009403 3.6e-09 64.3 47 74.5
Ciclev10017421m.g Citrus clementina HOM05D007756 ORTHO05D009403 4.7e-09 63.9 61 65.6
Glyma.07G191400 Glycine max HOM05D007756 ORTHO05D009403 4.7e-09 63.9 58 69.0
MELO3C007317.2 Cucumis melo HOM05D007756 ORTHO05D009403 1.1e-08 62.8 51 64.7
Potri.004G036350 Populus trichocarpa HOM05D007756 ORTHO05D009403 1.1e-08 62.8 52 69.2
Prupe.4G039100 Prunus persica HOM05D007756 ORTHO05D009403 1.1e-08 62.8 54 68.5
Cc02_g12640 Coffea canephora HOM05D007756 ORTHO05D009403 1.4e-08 62.4 50 68.0
Manes.17G040600 Manihot esculenta HOM05D007756 ORTHO05D009403 1.4e-08 62.4 52 71.2
Prupe.4G039200 Prunus persica HOM05D007756 ORTHO05D009403 1.4e-08 62.4 50 68.0
Glyma.08G057900 Glycine max HOM05D007756 ORTHO05D009403 2.3e-08 61.6 58 63.8
COL.COLO4_31554 Corchorus olitorius HOM05D007756 ORTHO05D009403 3.1e-08 61.2 57 59.6
Gohir.D06G128650 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.1e-08 61.2 50 64.0
Lalb_Chr09g0327421 Lupinus albus HOM05D007756 ORTHO05D009403 3.1e-08 61.2 51 66.7
Potri.011G044700 Populus trichocarpa HOM05D007756 ORTHO05D009403 4.0e-08 60.8 54 68.5
PGSC0003DMG400022449 Solanum tuberosum HOM05D007756 ORTHO05D009403 4.0e-08 60.8 47 70.2
CiPaw.10G120600 Carya illinoinensis HOM05D007756 ORTHO05D009403 5.2e-08 60.5 48 72.9
MELO3C007318.2 Cucumis melo HOM05D007756 ORTHO05D009403 5.2e-08 60.5 51 62.7
Eucgr.E03371 Eucalyptus grandis HOM05D007756 ORTHO05D009403 5.2e-08 60.5 50 66.0
Hma1.2p1_0144F.1_g064980 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 5.2e-08 60.5 55 67.3
Sed0008410 Sechium edule HOM05D007756 ORTHO05D009403 5.2e-08 60.5 52 61.5
Solyc02g078870.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 5.2e-08 60.5 47 68.1
Eucgr.E03374 Eucalyptus grandis HOM05D007756 ORTHO05D009403 6.8e-08 60.1 50 64.0
Eucgr.E03373 Eucalyptus grandis HOM05D007756 ORTHO05D009403 8.9e-08 59.7 54 64.8
GSVIVG01005837001 Vitis vinifera HOM05D007756 ORTHO05D009403 2.0e-07 58.5 49 61.2
Solyc02g078890.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 2.6e-07 58.2 53 64.2
Sopen02g023700 Solanum pennellii HOM05D007756 ORTHO05D009403 2.6e-07 58.2 53 64.2
MD05G1323400 Malus domestica HOM05D007756 ORTHO05D009403 3.4e-07 57.8 45 68.9
Lalb_Chr05g0218241 Lupinus albus HOM05D007756 ORTHO05D009403 4.4e-07 57.4 56 64.3
Eucgr.E03372 Eucalyptus grandis HOM05D007756 ORTHO05D009403 5.8e-07 57.0 50 62.0
Sed0004694 Sechium edule HOM05D007756 ORTHO05D009403 5.8e-07 57.0 51 58.8
PGSC0003DMG400022448 Solanum tuberosum HOM05D007756 ORTHO05D009403 5.8e-07 57.0 53 62.3
Aqoxy1G02679 Aquilegia oxysepala HOM05D007756 ORTHO05D009403 7.6e-07 56.6 63 54.0
Ca_18499_v3 Cicer arietinum L. HOM05D007756 ORTHO05D009403 9.9e-07 56.2 48 70.8
Gohir.D05G167000 Gossypium hirsutum HOM05D007756 ORTHO05D009403 9.9e-07 56.2 56 57.1
MD10G1301200 Malus domestica HOM05D007756 ORTHO05D009403 9.9e-07 56.2 49 65.3
FAN16G3405 Fragaria x ananassa HOM05D007756 ORTHO05D009403 1.3e-06 55.8 43 65.1
Lsat_1_v5_gn_1_124981 Lactuca sativa HOM05D007756 ORTHO05D009403 1.3e-06 55.8 53 64.2
CSS0020554 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 1.7e-06 55.5 47 63.8
CSS0041901 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 1.7e-06 55.5 47 63.8
CiPaw.10G120500 Carya illinoinensis HOM05D007756 ORTHO05D009403 1.7e-06 55.5 49 61.2
ClCG01G022590 Citrullus lanatus HOM05D007756 ORTHO05D009403 1.7e-06 55.5 47 61.7
Nn1g03943 Nelumbo nucifera HOM05D007756 ORTHO05D009403 1.7e-06 55.5 52 57.7
Cpa.g.sc27.103 Carica papaya HOM05D007756 ORTHO05D009403 2.2e-06 55.1 44 72.7
CsaV3_6G049780 Cucumis sativus L. HOM05D007756 ORTHO05D009403 2.2e-06 55.1 51 56.9
FvH4_3g04381 Fragaria vesca HOM05D007756 ORTHO05D009403 2.2e-06 55.1 43 65.1
FAN11G3808 Fragaria x ananassa HOM05D007756 ORTHO05D009403 2.2e-06 55.1 43 65.1
Lj4g0000448 Lotus japonicus HOM05D007756 ORTHO05D009403 2.2e-06 55.1 38 76.3
Lalb_Chr16g0383441 Lupinus albus HOM05D007756 ORTHO05D009403 2.9e-06 54.7 48 64.6
Nitab4.5_0003114g0110 Nicotiana tabacum HOM05D007756 ORTHO05D009403 3.7e-06 54.3 59 57.6
RcHm_v2.0_Chr5g0006781 Rosa chinensis HOM05D007756 ORTHO05D009403 3.7e-06 54.3 53 60.4
Potri.004G036375 Populus trichocarpa HOM05D007756 ORTHO05D009403 4.9e-06 53.9 54 57.4
Lsat_1_v5_gn_1_124861 Lactuca sativa HOM05D007756 ORTHO05D009403 6.4e-06 53.5 51 60.8
RcHm_v2.0_Chr5g0006771 Rosa chinensis HOM05D007756 ORTHO05D009403 6.4e-06 53.5 46 63.0
TPR.G32425 Trifolium pratense HOM05D007756 ORTHO05D009403 6.4e-06 53.5 49 67.3
Lj6g0018917 Lotus japonicus HOM05D020221 ORTHO05D009403 8.4e-06 53.1 52 61.5
Medtr4g090545 Medicago truncatula HOM05D007756 ORTHO05D009403 8.4e-06 53.1 49 67.3
Rhsim02G0120600 Rhododendron simsii HOM05D032808 ORTHO05D009403 8.4e-06 53.1 32 81.2


User provided reference genes

Program Settings