Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 6.8e-257 890.2 463 100.0
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.4e-209 733.0 463 81.4
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 4.2e-206 721.5 470 79.1
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.3e-202 709.9 457 78.8
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 4.0e-196 688.3 459 77.8
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 1.5e-195 686.4 462 77.3
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.0e-195 686.0 459 77.8
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 5.7e-195 684.5 420 81.4
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 2.2e-194 682.6 464 74.6
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 8.2e-194 680.6 461 75.3
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 4.1e-193 678.3 462 74.9
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.7e-192 674.1 400 82.2
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 5.0e-191 671.4 398 83.4
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 6.5e-191 671.0 461 74.4
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 8.5e-191 670.6 468 75.0
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.5e-190 669.1 461 74.0
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 3.2e-190 668.7 458 76.6
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 1.2e-189 666.8 444 77.9
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 2.1e-189 666.0 398 81.9
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 2.7e-189 665.6 389 84.3
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 2.7e-189 665.6 464 73.7
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.8e-188 662.9 404 81.9
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 2.3e-188 662.5 422 78.9
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 5.2e-188 661.4 401 81.8
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 6.8e-188 661.0 402 81.3
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 2.6e-187 659.1 464 72.6
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 5.7e-187 657.9 417 78.7
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 6.3e-186 654.4 386 83.7
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 9.1e-185 650.6 455 73.2
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 2.0e-184 649.4 470 70.6
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 2.7e-184 649.0 400 80.2
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 3.8e-183 645.2 386 82.1
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 5.0e-183 644.8 405 78.8
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 1.5e-182 643.3 412 78.4
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 4.2e-182 641.7 400 79.8
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 5.5e-182 641.3 400 79.8
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 8.8e-180 634.0 490 69.0
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 2.0e-179 632.9 440 74.3
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 5.7e-179 631.3 380 81.1
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 4.9e-178 628.2 405 78.0
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 8.3e-178 627.5 432 73.8
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.4e-177 626.7 412 77.2
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 5.4e-177 624.8 401 79.1
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 9.2e-177 624.0 408 77.9
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 2.7e-176 622.5 412 76.9
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 2.7e-176 622.5 394 79.2
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 3.5e-176 622.1 448 72.8
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 3.5e-176 622.1 403 76.9
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 3.8e-175 618.6 408 77.0
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.5e-174 616.7 407 76.2
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 2.5e-174 615.9 478 68.4
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 9.5e-174 614.0 412 76.7
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.6e-173 613.2 454 71.1
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 2.1e-173 612.8 377 81.2
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 3.6e-173 612.1 594 58.4
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 8.0e-173 610.9 440 72.0
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.4e-172 610.1 449 69.9
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 4.0e-172 608.6 374 80.5
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 8.9e-172 607.4 435 72.2
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.2e-171 607.1 405 74.6
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.5e-171 606.7 386 79.0
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 9.8e-171 604.0 415 75.2
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 3.2e-169 599.0 438 71.9
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 7.0e-169 597.8 419 73.3
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 7.0e-169 597.8 434 70.3
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 5.9e-168 594.7 404 76.2
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 3.9e-167 592.0 383 77.0
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 4.0e-164 582.0 418 72.5
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.5e-163 580.1 354 81.9
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 2.0e-163 579.7 368 78.5
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 3.4e-163 578.9 414 72.2
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 4.1e-161 572.0 410 71.0
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.9e-159 565.5 389 74.8
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.3e-158 561.2 440 67.0
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.2e-155 553.9 343 81.9
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 2.6e-155 552.7 405 69.1
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 1.0e-151 540.8 463 63.7
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 7.3e-150 534.6 432 67.4
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 8.9e-148 527.7 461 61.2
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 2.0e-147 526.6 414 65.9
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.5e-144 515.8 358 73.7
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.7e-143 513.5 411 67.2
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 3.0e-143 512.7 382 66.5
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 1.1e-142 510.8 398 66.8
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.1e-141 506.5 408 67.2
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.8e-140 503.4 391 68.0
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 1.8e-140 503.4 405 66.2
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 8.9e-140 501.1 398 66.6
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 4.2e-137 492.3 292 84.2
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 7.1e-129 464.9 346 69.9
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 1.5e-126 457.2 364 68.4
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.5e-118 430.6 409 55.0
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 3.4e-115 419.5 246 85.4
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.2e-113 412.9 262 78.2
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 5.1e-111 405.6 264 77.3
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.8e-109 399.8 399 54.4
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.4e-105 387.5 466 48.3
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 4.1e-92 342.8 251 73.3
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 9.7e-86 321.6 203 75.4
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 9.7e-86 321.6 538 40.0
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.7e-85 320.9 254 69.7
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 8.2e-85 318.5 252 69.4
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.5e-78 297.7 252 66.7
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.5e-73 280.4 185 71.9
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.2e-73 279.6 185 70.8
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.6e-72 277.7 172 80.2
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 2.2e-69 267.3 330 50.3
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 1.2e-67 261.5 193 68.4
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 2.2e-66 257.3 158 82.9
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.9e-65 254.2 157 82.2
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.5e-62 244.6 227 61.7
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.5e-62 244.6 227 61.7
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.5e-62 244.6 227 61.7
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 1.5e-62 244.6 175 72.0
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.5e-62 244.6 155 77.4
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 5.7e-62 242.7 137 86.9
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 5.0e-58 229.6 230 60.4
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 3.3e-57 226.9 136 82.4
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.4e-52 211.5 162 64.8
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 3.0e-50 203.8 137 71.5
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.2e-43 181.8 128 68.0
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 7.8e-43 179.1 154 68.2
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.3e-42 177.6 107 82.2
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 3.4e-38 163.7 181 55.8
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.2e-37 161.0 92 83.7
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 7.8e-35 152.5 143 55.2
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 3.8e-29 133.7 99 71.7
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-28 132.1 101 69.3
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.2e-27 128.6 74 78.4
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 3.5e-27 127.1 121 60.3
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 3.0e-26 124.0 74 82.4
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.2e-22 112.1 166 42.2
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.4e-20 105.1 86 60.5
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 5.4e-20 103.2 62 79.0
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 3.9e-18 97.1 177 38.4
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 3.4e-14 84.0 54 74.1
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.2e-11 75.5 73 53.4
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 2.1e-08 64.7 152 34.9
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 6.2e-08 63.2 132 34.8
CDE04G0254 Ceratophyllum demersum HOM05D001182 ORTHO05D008051 7.6e-06 56.2 44 56.8


User provided reference genes

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