Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 8.0e-80 300.4 160 100.0
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 4.6e-59 231.5 161 80.7
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 3.4e-46 188.7 158 70.3
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 5.4e-44 181.4 152 69.1
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 6.0e-43 177.9 160 70.0
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.3e-42 176.8 159 67.3
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 3.0e-42 175.6 161 67.7
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 6.6e-42 174.5 162 67.9
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 1.1e-41 173.7 162 65.4
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 7.3e-41 171.0 155 67.1
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 3.6e-40 168.7 159 66.7
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 4.7e-40 168.3 155 66.5
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 6.2e-40 167.9 159 66.0
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.1e-40 167.5 134 74.6
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.1e-39 167.2 135 74.1
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.1e-39 167.2 135 74.1
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.4e-39 166.8 162 66.7
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.4e-39 166.8 148 68.9
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.8e-39 166.4 159 66.7
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 4.0e-39 165.2 154 64.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 5.3e-39 164.9 132 73.5
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 9.0e-39 164.1 197 54.3
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.5e-38 163.3 154 65.6
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.5e-38 163.3 112 82.1
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 2.0e-38 162.9 149 66.4
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 2.6e-38 162.5 159 64.2
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 6.4e-37 157.9 159 64.8
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 8.4e-37 157.5 153 64.1
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 8.4e-37 157.5 163 62.0
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.9e-36 156.4 159 64.8
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 4.2e-36 155.2 159 64.2
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 4.2e-36 155.2 159 64.2
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 5.4e-36 154.8 134 66.4
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 5.4e-36 154.8 159 62.9
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 5.4e-36 154.8 159 62.9
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 7.1e-36 154.5 157 63.7
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.2e-35 153.7 159 63.5
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 4.6e-35 151.8 133 63.2
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 7.8e-35 151.0 134 66.4
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.3e-34 150.2 132 67.4
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.3e-34 150.2 132 67.4
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 2.3e-34 149.4 153 64.7
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.3e-34 149.4 134 65.7
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 2.3e-34 149.4 158 62.0
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.0e-34 149.1 142 63.4
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 3.9e-34 148.7 133 65.4
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 5.1e-34 148.3 160 61.2
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 6.6e-34 147.9 134 64.9
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 6.6e-34 147.9 134 64.9
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 8.7e-34 147.5 131 66.4
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 8.7e-34 147.5 135 65.2
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.1e-33 147.1 134 65.7
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 1.1e-33 147.1 155 61.3
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.5e-33 146.7 145 64.8
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.5e-33 146.7 133 64.7
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 1.9e-33 146.4 164 59.1
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 2.5e-33 146.0 136 65.4
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 3.3e-33 145.6 134 67.9
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 3.3e-33 145.6 136 64.0
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 4.3e-33 145.2 164 57.3
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 4.3e-33 145.2 164 57.3
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 4.3e-33 145.2 133 66.2
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 4.3e-33 145.2 138 62.3
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.3e-32 143.7 162 56.8
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.3e-32 143.7 149 60.4
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.3e-32 143.7 158 59.5
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 1.6e-32 143.3 160 60.0
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.6e-32 143.3 153 64.7
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.6e-32 143.3 133 66.2
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 3.6e-32 142.1 135 63.7
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 8.1e-32 141.0 149 59.1
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 1.4e-31 140.2 163 58.9
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 3.1e-31 139.0 139 61.9
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 4.0e-31 138.7 156 56.4
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 6.9e-31 137.9 140 60.7
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 9.0e-31 137.5 136 60.3
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 9.0e-31 137.5 153 61.4
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.0e-31 137.5 139 61.2
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 1.5e-30 136.7 166 56.0
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 2.0e-30 136.3 159 57.9
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 2.0e-30 136.3 159 57.9
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 2.0e-30 136.3 159 57.9
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 2.6e-30 136.0 155 58.1
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 3.4e-30 135.6 157 60.5
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 3.4e-30 135.6 155 56.8
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 4.5e-30 135.2 132 61.4
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 9.9e-30 134.0 155 56.1
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 1.7e-29 133.3 114 71.1
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 2.2e-29 132.9 106 74.5
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 8.4e-29 131.0 141 63.1
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.4e-28 130.2 148 58.1
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 1.9e-28 129.8 146 63.0
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.4e-28 129.4 134 60.4
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 7.1e-28 127.9 156 57.1
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 7.1e-28 127.9 136 58.8
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 1.6e-27 126.7 119 63.0
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 2.7e-27 125.9 134 60.4
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 3.5e-27 125.6 159 52.8
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 4.6e-27 125.2 150 55.3
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.0e-26 124.0 142 57.0
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.3e-26 123.6 74 86.5
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 1.9e-25 119.8 162 53.7
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 4.3e-25 118.6 84 76.2
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 4.3e-25 118.6 135 60.0
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 4.3e-25 118.6 158 53.8
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 5.6e-25 118.2 78 78.2
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 7.4e-25 117.9 151 54.3
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.1e-23 114.0 89 68.5
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 1.4e-23 113.6 104 62.5
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.8e-23 113.2 94 70.2
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.8e-23 113.2 94 70.2
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 3.1e-23 112.5 139 55.4
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 2.0e-22 109.8 131 56.5
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 2.6e-22 109.4 89 69.7
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 2.6e-22 109.4 106 61.3
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 1.3e-21 107.1 154 46.8
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 1.3e-21 107.1 87 70.1
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 4.2e-20 102.1 63 82.5
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 4.2e-20 102.1 71 78.9
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.7e-16 89.0 78 61.5
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 8.2e-16 87.8 123 48.8
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.4e-12 77.0 82 59.8
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 9.3e-12 74.3 133 46.6
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.6e-11 73.6 99 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 4.6e-11 72.0 111 49.5
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 3.0e-10 69.3 112 50.0
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 5.1e-10 68.6 141 42.6
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 6.9e-07 58.2 44 70.5


User provided reference genes

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