Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 4.8e-132 474.6 248 100.0
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 8.8e-110 400.6 248 85.5
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.2e-92 342.8 248 73.4
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 7.3e-88 327.8 254 72.8
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 4.7e-87 325.1 246 68.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 8.0e-87 324.3 236 72.5
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 5.2e-86 321.6 235 71.1
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 3.4e-85 318.9 200 81.5
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.7e-84 316.6 248 71.0
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.7e-84 316.6 246 70.3
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 3.2e-83 312.4 246 67.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.7e-82 309.3 231 71.0
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.7e-82 309.3 233 70.4
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.0e-81 307.4 239 69.9
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.9e-81 305.4 238 68.1
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 5.0e-81 305.1 244 66.8
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 5.0e-81 305.1 239 70.7
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 6.6e-81 304.7 244 67.6
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.1e-80 303.9 271 62.4
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.5e-80 302.8 246 67.9
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 3.3e-80 302.4 247 66.4
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.3e-80 302.4 249 66.3
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 3.3e-80 302.4 237 68.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.3e-80 302.4 250 70.0
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 4.3e-80 302.0 239 69.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.6e-80 301.6 244 66.0
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 7.3e-80 301.2 236 70.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 7.3e-80 301.2 237 68.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.2e-79 300.4 244 64.3
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.1e-79 299.7 241 66.4
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.1e-79 299.7 239 69.0
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.8e-79 299.3 249 65.5
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.8e-79 299.3 239 66.9
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 3.6e-79 298.9 248 64.5
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.7e-79 298.5 236 69.5
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.8e-78 296.6 238 67.6
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 3.1e-78 295.8 239 66.1
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 5.2e-78 295.0 243 67.9
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 8.9e-78 294.3 245 64.5
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-77 293.9 245 65.3
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.2e-77 293.9 245 65.3
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.0e-77 293.1 236 66.5
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.0e-77 293.1 248 64.5
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.0e-77 293.1 240 69.6
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 3.4e-77 292.4 234 69.7
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.4e-77 292.0 196 78.1
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 7.5e-77 291.2 247 64.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 9.8e-77 290.8 248 64.9
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.8e-77 290.8 248 64.9
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.3e-76 290.4 248 64.5
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.7e-76 290.0 237 67.1
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.9e-76 289.3 234 66.2
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.9e-76 289.3 237 67.1
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 4.9e-76 288.5 236 65.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.1e-75 287.3 246 64.2
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.4e-75 287.0 238 64.3
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.4e-75 287.0 238 66.4
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.4e-75 287.0 237 67.1
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.9e-75 286.6 244 64.8
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.4e-75 286.2 200 74.0
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.2e-75 285.8 240 66.7
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 3.2e-75 285.8 227 70.5
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.1e-75 285.4 240 66.7
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 4.1e-75 285.4 245 62.9
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.1e-75 285.4 201 73.6
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 9.2e-75 284.3 245 64.9
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.6e-74 283.5 260 65.8
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 3.5e-74 282.3 239 69.5
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.0e-74 281.6 242 64.9
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 6.0e-74 281.6 241 63.5
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.9e-73 278.9 261 61.3
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.6e-73 278.1 220 68.2
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-72 277.3 255 60.4
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-72 277.3 255 60.4
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.5e-72 276.9 239 63.2
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 9.5e-72 274.2 253 61.3
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-71 273.9 253 61.3
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-71 273.5 247 62.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.6e-71 273.5 233 65.7
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.1e-71 273.1 242 63.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 6.2e-71 271.6 244 62.3
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.2e-71 271.6 217 70.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 6.2e-71 271.6 236 62.3
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 8.1e-71 271.2 239 61.1
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 8.1e-71 271.2 220 66.8
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.8e-70 270.0 220 66.4
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 5.2e-70 268.5 210 71.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.8e-70 268.1 217 69.6
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 6.8e-70 268.1 212 66.5
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 8.9e-70 267.7 198 70.2
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-69 267.3 197 75.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.2e-69 267.3 250 59.2
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.0e-69 266.5 191 73.3
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.0e-69 266.5 265 62.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.0e-69 266.5 193 74.1
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 2.6e-69 266.2 238 64.7
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.6e-69 266.2 242 61.2
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.9e-68 262.7 244 65.2
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 9.2e-67 257.7 238 63.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.2e-66 257.3 244 63.9
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 7.8e-66 254.6 203 68.5
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.1e-65 251.9 228 62.3
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.4e-62 243.8 227 60.4
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.4e-62 243.8 230 60.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.8e-62 243.4 249 57.0
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.4e-62 243.0 230 57.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.6e-61 239.6 227 57.3
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 4.4e-61 238.8 236 58.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.4e-61 238.8 226 57.1
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.1e-59 234.2 232 58.6
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.4e-59 233.8 260 53.5
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 4.2e-59 232.3 227 60.4
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 7.1e-59 231.5 225 56.0
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 6.0e-58 228.4 258 52.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 6.0e-58 228.4 199 61.8
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 7.8e-58 228.0 188 64.4
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.8e-58 228.0 234 57.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.0e-57 227.6 170 71.2
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.0e-57 227.6 218 57.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 3.0e-57 226.1 199 60.8
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 5.1e-57 225.3 260 51.2
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 5.1e-57 225.3 247 54.7
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.3e-56 222.6 198 63.1
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 7.3e-56 221.5 262 52.7
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 2.1e-55 219.9 162 71.0
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 3.6e-55 219.2 162 69.8
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 3.6e-55 219.2 162 69.8
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.7e-55 218.8 207 60.4
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.9e-52 209.5 236 51.7
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 4.9e-52 208.8 196 60.7
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 4.2e-51 205.7 186 60.2
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 5.4e-51 205.3 148 72.3
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.1e-50 203.4 173 65.3
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-45 187.6 128 76.6
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 5.4e-43 178.7 229 48.5
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.3e-43 177.9 183 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.7e-42 176.4 196 51.5
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 7.9e-42 174.9 218 48.6
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 8.7e-41 171.4 185 51.9
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.1e-38 164.5 225 47.1
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 3.1e-38 162.9 152 56.6
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.9e-35 153.7 115 72.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.1e-35 151.8 196 46.4
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.3e-33 147.5 207 44.9
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 3.0e-33 146.4 99 75.8
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-30 137.9 188 46.8
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.9e-30 135.2 96 74.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.6e-29 133.3 105 66.7
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.5e-27 126.7 197 42.6
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.3e-23 114.4 124 53.2
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.6e-23 114.0 83 67.5
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 4.6e-18 95.9 111 54.1
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 3.0e-17 93.2 87 55.2
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 6.7e-17 92.0 87 55.2
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 2.5e-16 90.1 101 46.5
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.4e-11 74.3 148 42.6
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 7.4e-08 62.0 66 57.6
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.2e-07 60.5 126 37.3
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 1.1e-06 58.2 91 41.8


User provided reference genes

Program Settings