Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 4.5e-88 327.8 155 100.0
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 4.7e-77 291.2 155 87.1
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 5.2e-76 287.7 155 85.2
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 7.0e-73 277.3 155 82.6
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.9e-70 269.2 153 80.4
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 4.3e-70 268.1 156 78.8
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.6e-69 266.2 150 80.0
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 2.8e-69 265.4 155 78.1
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 3.6e-69 265.0 156 78.8
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 4.0e-68 261.5 154 77.3
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.2e-67 260.0 150 79.3
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 4.9e-66 254.6 151 76.8
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 1.9e-65 252.7 150 72.7
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 3.2e-65 251.9 150 76.7
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 4.1e-65 251.5 149 76.5
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 9.2e-65 250.4 156 75.0
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 9.2e-65 250.4 155 74.2
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 1.2e-64 250.0 151 74.8
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 1.6e-64 249.6 151 76.2
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 3.5e-64 248.4 158 74.7
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.0e-63 246.9 151 73.5
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 5.1e-63 244.6 151 75.5
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 1.2e-61 240.0 151 69.5
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 1.6e-61 239.6 149 72.5
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.8e-61 238.8 144 76.4
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 3.1e-60 235.3 151 70.9
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 3.4e-59 231.9 151 70.2
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 3.4e-59 231.9 151 70.2
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 5.8e-59 231.1 148 71.6
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 1.3e-58 229.9 149 70.5
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.3e-58 229.9 149 70.5
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 8.3e-58 227.3 149 69.1
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 8.3e-58 227.3 150 66.0
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.1e-57 226.9 151 68.2
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.1e-57 226.9 149 69.1
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 1.4e-57 226.5 148 69.6
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 4.1e-57 224.9 153 65.4
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 3.5e-56 221.9 153 64.7
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 2.3e-55 219.2 151 66.2
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 8.6e-55 217.2 149 65.8
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 1.5e-54 216.5 148 68.2
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.9e-54 216.1 154 67.5
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 2.5e-54 215.7 154 64.3
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 5.6e-54 214.5 117 81.2
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 3.6e-53 211.8 154 67.5
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 4.7e-53 211.5 152 65.1
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 8.1e-53 210.7 151 61.6
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 1.1e-52 210.3 153 59.5
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 1.4e-52 209.9 152 63.2
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 4.0e-52 208.4 151 66.2
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 6.8e-52 207.6 152 62.5
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 6.8e-52 207.6 152 62.5
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 1.2e-51 206.8 151 61.6
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.5e-51 206.5 151 59.6
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 2.6e-51 205.7 152 61.8
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 2.6e-51 205.7 152 61.8
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 3.4e-51 205.3 152 61.8
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.3e-50 203.4 152 61.2
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 2.9e-50 202.2 150 64.0
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 3.8e-50 201.8 149 60.4
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 6.4e-50 201.1 148 60.8
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 6.4e-50 201.1 148 60.8
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 3.2e-49 198.7 152 63.8
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 4.2e-49 198.4 149 59.1
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 1.2e-48 196.8 153 58.2
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 4.6e-48 194.9 152 58.6
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.6e-48 194.9 112 76.8
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 1.3e-47 193.4 148 60.8
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 8.7e-47 190.7 128 69.5
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 1.1e-46 190.3 152 57.2
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 1.1e-46 190.3 154 53.9
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 2.5e-46 189.1 152 57.2
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 2.8e-45 185.7 150 56.7
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.4e-44 183.3 153 57.5
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 3.1e-44 182.2 149 55.7
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 4.9e-42 174.9 122 64.8
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 3.3e-38 162.2 156 51.9
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 4.8e-37 158.3 122 61.5
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 4.2e-33 145.2 102 68.6
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 1.3e-29 133.7 139 43.9
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 5.3e-28 128.3 104 64.4
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 1.1e-20 104.0 150 39.3
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 4.0e-20 102.1 150 39.3
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 5.5e-17 91.7 54 77.8
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 2.5e-14 82.8 83 47.0
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 9.7e-14 80.9 62 54.8
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 9.4e-09 64.3 84 38.1
Mapoly0047s0088 Marchantia polymorpha HOM05D031660 ORTHO05D009870 1.1e-06 57.4 82 39.0


User provided reference genes

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