Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 3.5e-39 164.9 108 100.0
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 2.5e-24 115.5 97 84.5
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 7.9e-23 110.5 97 84.5
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 1.5e-21 106.3 97 78.4
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 2.0e-21 105.9 100 77.0
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 4.4e-21 104.8 100 76.0
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 4.4e-21 104.8 99 80.8
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 4.4e-21 104.8 97 80.4
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 2.2e-20 102.4 97 79.4
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 2.2e-20 102.4 99 78.8
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 6.3e-20 100.9 97 78.4
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 1.1e-19 100.1 100 75.0
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 1.4e-19 99.8 98 71.4
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.4e-19 99.8 97 80.4
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 1.4e-19 99.8 97 76.3
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-19 99.4 97 75.3
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-19 99.4 97 75.3
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 2.4e-19 99.0 97 80.4
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 2.4e-19 99.0 97 80.4
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 3.1e-19 98.6 100 75.0
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 3.1e-19 98.6 100 75.0
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 3.1e-19 98.6 100 75.0
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 4.1e-19 98.2 97 74.2
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 9.1e-19 97.1 100 75.0
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 1.2e-18 96.7 94 76.6
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 2.0e-18 95.9 97 76.3
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 2.0e-18 95.9 96 78.1
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 2.0e-18 95.9 90 82.2
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 3.4e-18 95.1 94 78.7
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 4.5e-18 94.7 98 76.5
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 1.7e-17 92.8 97 73.2
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 2.2e-17 92.4 90 76.7
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 2.9e-17 92.0 88 77.3
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 2.9e-17 92.0 99 71.7
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 6.5e-17 90.9 97 73.2
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 8.5e-17 90.5 100 67.0
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 5.5e-16 87.8 88 75.0
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 9.4e-16 87.0 88 72.7
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 1.2e-15 86.7 88 75.0
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 3.6e-15 85.1 88 70.5
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 8.0e-15 84.0 93 72.0
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 8.0e-15 84.0 95 71.6
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.4e-14 83.2 85 78.8
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 2.3e-14 82.4 86 75.6
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 2.3e-14 82.4 86 75.6
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 5.2e-14 81.3 85 74.1
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 6.7e-14 80.9 85 77.6
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 6.7e-14 80.9 97 71.1
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 8.8e-14 80.5 97 72.2
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 1.1e-13 80.1 91 71.4
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 3.3e-13 78.6 83 74.7
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 4.4e-13 78.2 86 74.4
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 4.4e-13 78.2 87 72.4
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 4.4e-13 78.2 87 72.4
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 4.4e-13 78.2 90 68.9
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 4.4e-13 78.2 85 76.5
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 7.4e-13 77.4 86 74.4
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 7.4e-13 77.4 86 74.4
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 7.4e-13 77.4 86 74.4
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 9.7e-13 77.0 83 73.5
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 1.3e-12 76.6 86 75.6
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 2.2e-12 75.9 86 73.3
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 2.2e-12 75.9 85 75.3
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.8e-12 75.5 86 72.1
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 2.8e-12 75.5 88 70.5
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 3.7e-12 75.1 88 72.7
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 3.7e-12 75.1 85 75.3
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 8.2e-12 73.9 41 78.0
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.4e-11 73.2 79 75.9
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 1.8e-11 72.8 90 66.7
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 2.4e-11 72.4 80 73.8
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 3.1e-11 72.0 92 66.3
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 7.0e-11 70.9 92 66.3
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 1.2e-10 70.1 82 76.8
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 2.0e-10 69.3 85 71.8
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 7.7e-10 67.4 39 71.8
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 1.0e-09 67.0 39 74.4
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.7e-09 66.2 86 68.6
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 1.7e-09 66.2 71 80.3
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 2.2e-09 65.9 82 74.4
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 2.9e-09 65.5 40 70.0
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 3.8e-09 65.1 89 66.3
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 5.0e-09 64.7 97 37.1
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 6.5e-09 64.3 40 67.5
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 1.5e-08 63.2 90 67.8
Lj1A1206T64 Lonicera japonica HOM05D021202 ORTHO05D009769 5.5e-08 61.2 95 35.8
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 2.1e-07 59.3 82 73.2
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 6.1e-07 57.8 36 66.7
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-06 56.2 37 62.2
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 2.3e-06 55.8 40 57.5
Ca_18542_v3 Cicer arietinum L. HOM05D021202 ORTHO05D009769 4.0e-06 55.1 90 34.4
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 4.0e-06 55.1 40 55.0
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 5.2e-06 54.7 42 54.8


User provided reference genes

Program Settings