Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 2.9e-106 388.7 210 100.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 3.4e-86 322.0 210 81.0
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 2.9e-85 318.9 210 81.0
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.4e-84 316.6 210 81.0
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.3e-82 310.1 208 78.4
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 5.0e-82 308.1 206 79.1
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 5.0e-82 308.1 208 78.8
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 7.3e-81 304.3 211 78.7
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 4.7e-80 301.6 213 77.5
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 3.1e-79 298.9 212 75.5
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.2e-78 297.0 220 74.5
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 2.6e-78 295.8 213 77.0
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.6e-78 295.8 212 77.4
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 2.6e-78 295.8 212 75.9
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.2e-77 292.7 212 73.6
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 8.3e-77 290.8 211 73.0
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 6.0e-75 284.6 212 74.5
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 6.0e-75 284.6 210 75.2
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.0e-74 282.3 211 73.9
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 6.6e-74 281.2 215 74.0
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 1.2e-72 276.9 215 72.6
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 2.8e-72 275.8 184 78.3
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 2.8e-72 275.8 215 73.0
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 4.7e-72 275.0 206 76.2
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 6.2e-72 274.6 210 73.3
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 8.1e-72 274.2 217 72.4
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 1.1e-71 273.9 224 69.2
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.4e-71 273.5 209 75.1
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.4e-71 273.5 211 71.1
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 3.1e-71 272.3 212 71.7
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 6.8e-71 271.2 211 70.6
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 8.9e-71 270.8 210 70.5
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 1.2e-70 270.4 209 69.4
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 1.2e-70 270.4 222 71.6
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 2.0e-70 269.6 214 70.6
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 2.6e-70 269.2 215 70.7
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 7.5e-70 267.7 169 81.7
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 9.9e-70 267.3 210 70.0
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 2.9e-69 265.8 210 72.4
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.4e-69 264.6 214 70.1
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.1e-68 263.8 210 69.0
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.1e-68 263.8 210 69.0
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.9e-68 263.1 212 69.3
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.9e-68 263.1 177 77.4
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 2.4e-68 262.7 210 69.0
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 7.1e-68 261.2 213 68.1
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 1.6e-67 260.0 211 69.7
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 6.0e-67 258.1 214 71.5
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 2.3e-66 256.1 169 78.1
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.0e-66 255.8 211 67.8
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 3.9e-66 255.4 212 67.5
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 5.1e-66 255.0 213 68.5
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 6.6e-66 254.6 195 70.3
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 1.5e-65 253.4 213 68.1
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 2.5e-65 252.7 195 71.3
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 5.6e-65 251.5 213 68.1
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 5.6e-65 251.5 211 67.8
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 1.2e-64 250.4 195 70.8
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 2.8e-64 249.2 184 73.4
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 6.2e-64 248.1 210 66.2
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 8.9e-63 244.2 212 64.6
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 8.9e-63 244.2 174 75.9
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.2e-62 243.8 226 61.9
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 1.2e-62 243.8 213 64.8
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 1.5e-62 243.4 207 63.3
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 7.6e-62 241.1 184 70.7
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 3.8e-61 238.8 213 62.9
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 4.9e-61 238.4 190 64.7
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 8.4e-61 237.7 255 59.2
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 2.4e-60 236.1 200 63.5
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 7.1e-60 234.6 213 65.7
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 3.0e-58 229.2 145 83.4
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 5.1e-58 228.4 213 64.8
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 1.4e-55 220.3 210 61.9
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 3.1e-55 219.2 170 72.4
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 3.8e-53 212.2 211 58.8
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.8e-53 212.2 154 75.3
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 6.4e-53 211.5 144 78.5
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 1.4e-52 210.3 210 60.5
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.9e-52 209.9 156 71.2
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 5.4e-52 208.4 146 75.3
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.1e-51 206.5 142 78.2
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 2.1e-51 206.5 210 56.2
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 3.5e-51 205.7 214 57.9
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 7.8e-51 204.5 214 57.0
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 7.8e-51 204.5 204 58.3
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 1.9e-49 199.9 200 57.5
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 1.9e-49 199.9 155 71.6
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.1e-48 196.4 161 68.9
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 6.2e-48 194.9 154 69.5
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 8.1e-48 194.5 218 56.4
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 1.1e-47 194.1 151 70.2
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.8e-47 193.4 174 58.0
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 2.0e-46 189.9 151 69.5
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 4.5e-46 188.7 192 54.7
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.3e-45 187.2 215 51.6
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 3.2e-44 182.6 211 55.5
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 9.3e-44 181.0 165 63.0
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 5.1e-42 175.3 175 58.9
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 8.7e-42 174.5 215 43.7
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.3e-40 170.6 216 54.2
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 8.1e-40 167.9 210 51.0
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 1.0e-37 161.0 214 51.9
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 8.7e-34 147.9 194 50.0
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 1.3e-32 144.1 169 52.7
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 6.9e-31 138.3 208 46.6
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 6.9e-31 138.3 208 39.9
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 2.0e-30 136.7 131 60.3
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 2.2e-24 116.7 101 64.4
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 1.3e-21 107.5 153 37.9
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.9e-21 106.3 174 37.9
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 9.4e-20 101.3 206 38.8
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.6e-19 100.5 100 60.0
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.7e-19 99.8 88 63.6
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.7e-18 95.1 166 42.2
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 8.8e-18 94.7 166 42.2
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 5.7e-17 92.0 95 55.8
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.1e-15 87.8 144 43.1
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.4e-15 87.4 73 67.1
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 4.1e-15 85.9 68 70.6
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.4e-12 77.4 98 48.0
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.4e-12 77.4 129 38.8
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 2.5e-12 76.6 79 59.5
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 3.9e-10 69.3 42 88.1
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 8.8e-10 68.2 55 65.5
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 3.1e-07 59.7 66 45.5
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 3.1e-07 59.7 66 45.5
TAR636G0634 Trochodendron aralioides HOM05D006133 ORTHO05D007855 3.5e-06 56.2 103 35.9


User provided reference genes

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