Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 8.2e-252 873.2 437 100.0
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 1.7e-209 732.6 435 83.2
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 1.5e-197 693.0 443 79.2
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.6e-197 692.2 443 78.3
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.7e-196 689.5 441 78.9
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 6.4e-196 687.6 442 78.7
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 1.1e-195 686.8 440 79.1
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 1.4e-195 686.4 450 77.8
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 5.4e-195 684.5 436 78.0
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 7.0e-195 684.1 445 77.8
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 7.8e-194 680.6 442 76.5
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 2.3e-193 679.1 437 78.3
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 2.3e-193 679.1 439 77.7
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 1.9e-192 676.0 466 75.5
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 1.6e-191 672.9 443 77.4
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 4.7e-191 671.4 436 76.4
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 3.1e-190 668.7 495 71.7
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 4.0e-190 668.3 430 78.6
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 2.0e-189 666.0 436 75.9
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 1.3e-188 663.3 447 74.9
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 1.7e-188 662.9 442 76.2
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 1.7e-188 662.9 442 75.3
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 2.2e-188 662.5 439 75.4
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 8.3e-188 660.6 450 74.4
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 2.4e-187 659.1 458 74.2
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 7.0e-187 657.5 443 74.5
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.6e-186 656.4 439 74.7
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 1.6e-186 656.4 436 75.2
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 6.0e-186 654.4 447 74.0
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.3e-185 653.3 441 75.1
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.3e-185 653.3 430 75.6
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.3e-185 653.3 437 74.8
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 2.5e-184 649.0 441 74.1
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 4.3e-184 648.3 443 74.3
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.8e-183 645.6 436 74.3
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 6.2e-183 644.4 439 75.2
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 1.1e-182 643.7 439 75.2
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 1.8e-182 642.9 437 75.5
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 1.8e-182 642.9 436 75.5
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 3.1e-182 642.1 447 72.7
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 6.8e-182 641.0 444 71.4
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 6.8e-182 641.0 444 72.7
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 7.5e-181 637.5 437 73.5
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 7.5e-181 637.5 439 74.5
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 9.9e-181 637.1 443 70.7
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.7e-180 636.3 438 71.7
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 3.7e-180 635.2 436 74.3
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 1.4e-179 633.3 441 74.4
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 1.4e-179 633.3 444 70.5
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 3.2e-179 632.1 445 71.7
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 4.1e-179 631.7 441 74.1
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 2.1e-178 629.4 446 72.2
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 1.7e-177 626.3 439 72.2
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 2.3e-177 625.9 437 73.7
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 3.9e-177 625.2 431 72.6
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 6.6e-177 624.4 437 74.4
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 6.6e-177 624.4 430 74.2
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 8.6e-177 624.0 430 72.8
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 3.3e-176 622.1 440 72.5
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 3.3e-176 622.1 445 70.8
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 9.5e-176 620.5 439 72.4
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 4.7e-175 618.2 439 72.4
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 6.2e-175 617.8 445 72.6
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 8.9e-174 614.0 444 71.4
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.6e-173 612.5 450 72.4
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 7.6e-173 610.9 440 71.8
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.2e-172 609.4 448 70.8
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 4.6e-170 601.7 445 67.4
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 3.9e-169 598.6 436 70.0
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 1.2e-167 593.6 442 69.2
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 1.6e-167 593.2 442 69.2
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 6.2e-167 591.3 444 68.9
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 5.3e-166 588.2 432 69.7
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 9.0e-166 587.4 446 67.7
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 2.0e-165 586.3 443 68.4
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 2.0e-165 586.3 434 68.9
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 4.4e-165 585.1 447 68.7
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 4.9e-164 581.6 444 68.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 9.3e-163 577.4 440 68.6
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 9.3e-163 577.4 440 68.6
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 2.1e-162 576.2 451 67.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 3.5e-162 575.5 439 68.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 3.5e-162 575.5 439 68.1
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 2.5e-160 569.3 433 69.3
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 4.3e-160 568.5 440 66.8
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 4.8e-159 565.1 434 66.8
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 8.1e-159 564.3 452 65.5
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.8e-158 563.1 449 67.3
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 2.3e-153 546.2 370 74.3
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.5e-152 543.5 444 64.6
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 1.3e-151 540.4 442 62.9
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 5.3e-150 535.0 438 64.4
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 3.4e-149 532.3 432 64.4
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 4.9e-148 528.5 389 70.7
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 9.3e-147 524.2 443 62.1
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 3.0e-145 519.2 451 61.9
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.5e-144 516.2 348 76.1
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 3.7e-143 512.3 343 75.2
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 1.1e-139 500.7 350 72.3
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.2e-138 497.3 434 62.9
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 1.8e-137 493.4 441 59.6
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 4.1e-134 482.3 350 73.4
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.1e-131 474.2 361 70.1
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 2.5e-131 473.0 447 60.0
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 5.9e-125 451.8 445 52.6
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 5.0e-124 448.7 331 70.4
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 7.2e-123 444.9 293 77.5
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 6.7e-121 438.3 610 44.9
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 6.3e-119 431.8 437 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 1.3e-116 424.1 439 49.7
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 3.7e-111 406.0 430 49.8
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 3.6e-90 336.3 450 43.3
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 4.7e-90 335.9 278 65.5
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 8.0e-90 335.1 210 79.0
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 7.5e-80 302.0 316 50.0
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.3e-76 290.4 335 50.1
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 2.6e-72 276.9 212 64.2
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.6e-51 206.1 143 70.6
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 7.9e-45 185.7 200 53.5
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 3.1e-41 173.7 489 30.3
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 4.5e-40 169.9 119 68.1
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.7e-29 134.0 102 66.7
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 7.6e-24 115.9 113 49.6
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 1.6e-21 108.2 98 51.0
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 8.7e-20 102.4 91 57.1
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 3.2e-14 84.0 68 61.8
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 3.3e-11 73.9 64 51.6
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 7.4e-11 72.8 126 38.1
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 3.4e-08 63.9 40 75.0
Cfa022434 Carpinus fangiana HOM05D006332 ORTHO05D121602 7.7e-08 62.8 282 24.5
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.7e-08 62.8 62 53.2
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 3.8e-07 60.5 37 75.7
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 5.0e-07 60.1 48 58.3


User provided reference genes

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