Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 0.0e+00 1709.5 906 100.0
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 0.0e+00 1349.0 906 79.6
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 0.0e+00 1129.0 911 68.3
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 0.0e+00 1082.8 919 65.8
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 0.0e+00 1075.1 928 65.3
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 3.1e-293 1011.9 914 62.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 3.3e-287 991.9 924 63.2
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 8.1e-286 987.3 903 62.3
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.6e-281 973.0 953 60.3
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.6e-278 961.8 911 61.7
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 2.9e-275 952.2 925 59.9
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.2e-273 946.8 907 60.9
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.1e-271 940.3 925 60.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-270 936.8 918 61.1
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.6e-265 919.8 972 57.2
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.1e-265 919.5 936 58.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 7.8e-265 917.5 795 65.2
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.3e-263 912.1 922 58.9
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 3.4e-260 902.1 914 58.0
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.6e-257 893.3 929 57.8
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 7.4e-255 884.4 926 57.0
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.6e-254 882.1 924 56.8
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 8.1e-254 880.9 949 57.1
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.7e-251 873.2 899 58.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.3e-248 862.8 951 56.2
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 3.0e-248 862.4 918 56.2
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.1e-247 860.5 913 56.8
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 2.1e-246 856.3 944 55.5
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.8e-246 855.9 1030 52.6
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.8e-246 855.9 1010 52.9
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 2.4e-245 852.8 951 55.3
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.2e-244 850.5 797 61.0
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 3.4e-244 849.0 912 57.3
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.7e-243 846.7 925 56.4
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 6.5e-243 844.7 913 56.3
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 4.2e-242 842.0 905 56.8
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 5.5e-242 841.6 918 55.7
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.1e-241 839.7 932 55.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.0e-240 837.4 954 54.3
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.9e-239 833.2 915 55.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 9.6e-239 830.9 926 55.1
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 4.8e-238 828.6 960 53.9
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-237 827.0 949 53.2
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.3e-237 825.1 932 54.4
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-236 823.9 932 54.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.0e-236 823.2 923 55.3
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.4e-236 822.4 809 59.5
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 7.6e-236 821.2 738 62.5
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.9e-235 819.3 825 56.7
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.5e-235 818.1 992 52.1
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 6.5e-235 818.1 1002 51.6
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 8.4e-235 817.8 956 53.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-234 817.4 988 51.9
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.9e-234 816.6 974 51.4
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 7.2e-234 814.7 986 52.1
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.2e-233 813.9 926 55.0
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.2e-233 813.9 835 56.8
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.1e-233 813.1 954 52.6
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.6e-233 812.0 986 52.1
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 7.9e-233 811.2 919 54.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-232 810.8 919 54.5
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.7e-232 808.1 987 51.9
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.3e-231 805.4 927 53.4
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.4e-229 800.4 1003 50.3
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 4.5e-228 795.4 1116 47.4
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.9e-226 790.0 985 51.3
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.0e-224 784.3 1025 50.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.8e-224 783.5 975 51.7
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 5.7e-223 778.5 911 54.6
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.4e-221 773.9 949 51.7
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.5e-220 768.8 914 51.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.2e-219 766.5 924 54.1
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 7.2e-218 761.5 916 53.2
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.1e-215 754.2 858 53.0
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.0e-211 741.1 908 49.6
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.7e-211 740.3 909 49.8
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.5e-211 738.4 947 49.0
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.5e-210 736.5 919 50.8
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.5e-210 736.5 908 50.7
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.2e-209 734.2 876 52.1
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.7e-209 733.0 912 50.3
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.7e-209 733.0 913 50.2
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 4.7e-209 732.3 922 50.1
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 6.1e-209 731.9 911 50.2
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 6.1e-209 731.9 909 50.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.1e-207 727.6 956 49.1
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 2.8e-206 723.0 914 49.1
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 8.2e-206 721.5 932 48.9
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.1e-205 719.2 912 49.8
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 4.1e-205 719.2 1021 47.0
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 5.3e-205 718.8 915 49.7
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 5.3e-205 718.8 917 50.2
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 5.3e-205 718.8 990 47.5
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 7.0e-205 718.4 913 49.2
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 7.0e-205 718.4 915 49.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.3e-203 714.1 921 48.9
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 2.9e-203 713.0 811 52.4
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 2.5e-202 709.9 913 49.0
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 2.5e-202 709.9 913 49.0
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 5.5e-202 708.8 1019 46.4
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 2.1e-201 706.8 944 48.7
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 5.7e-199 698.7 862 50.1
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 9.8e-199 698.0 981 46.8
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 9.8e-199 698.0 898 49.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 4.8e-198 695.7 862 50.1
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.4e-197 692.2 913 48.2
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 7.0e-197 691.8 914 49.0
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.0e-195 688.0 797 51.7
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 5.0e-195 685.6 979 46.1
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 7.2e-194 681.8 940 48.0
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.3e-192 676.8 926 49.7
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.6e-191 673.3 870 49.5
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 3.4e-191 672.9 888 49.7
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 3.1e-189 666.4 948 47.0
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.2e-188 664.5 946 46.6
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.2e-188 664.5 931 48.4
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 7.7e-188 661.8 907 48.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 2.5e-186 656.8 936 46.6
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.3e-186 656.4 878 47.0
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.3e-186 656.0 878 47.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.9e-184 648.3 858 49.0
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.4e-181 639.0 797 50.6
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.6e-180 637.5 936 45.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 7.5e-175 618.6 779 48.9
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 8.6e-155 552.0 820 43.7
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 7.6e-151 538.9 803 43.7
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.9e-149 534.3 948 41.5
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 8.7e-131 472.2 981 38.7
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.3e-130 470.3 882 39.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.9e-125 454.5 371 67.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 7.1e-125 452.6 974 36.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 5.0e-118 429.9 978 35.8
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 5.0e-118 429.9 978 35.8
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.5e-111 408.3 540 50.2
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 3.3e-106 390.6 904 34.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.1e-104 384.0 673 39.7
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.6e-100 370.5 343 60.9
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.2e-85 319.7 286 59.8
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 8.8e-83 312.8 372 53.2
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 8.3e-81 306.2 474 44.5
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.7e-79 299.7 389 51.9
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 2.4e-72 278.1 963 29.2
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.8e-70 270.8 255 62.4
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 4.3e-69 267.3 398 48.2
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.7e-57 228.8 137 84.7
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 3.7e-57 227.6 259 49.0
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 8.6e-46 189.9 484 33.9
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.0e-43 181.0 187 55.1
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.1e-37 162.9 226 46.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.5e-37 162.5 168 55.4
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 4.0e-35 154.5 209 43.1
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.6e-34 150.2 144 59.7
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.9e-33 148.3 208 50.0
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 5.6e-29 134.0 156 46.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 2.1e-28 132.1 111 59.5
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 4.5e-26 124.4 86 72.1
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 2.3e-22 112.1 79 72.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 4.3e-21 107.8 91 64.8
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 6.2e-20 104.0 93 58.1
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.4e-19 102.8 103 52.4
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 2.4e-19 102.1 63 79.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 5.3e-19 100.9 57 89.5
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 5.8e-18 97.4 89 57.3
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 9.9e-18 96.7 71 67.6
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 4.9e-17 94.4 118 44.9
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-16 93.2 111 47.7
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.4e-16 92.0 89 55.1
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.2e-16 91.3 92 58.7
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.1e-16 90.5 59 83.1
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 7.9e-15 87.0 97 53.6
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 8.7e-14 83.6 95 45.3
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 1.1e-13 83.2 97 47.4
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 4.8e-12 77.8 69 59.4
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.1e-11 76.6 67 59.7
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.8e-11 75.9 125 39.2
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.0e-09 70.1 46 84.8
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.9e-09 68.6 51 60.8
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 6.5e-09 67.4 126 37.3
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 4.2e-08 64.7 66 50.0
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 5.5e-08 64.3 307 26.1
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 7.1e-08 63.9 44 70.5
MBI19_g07393_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 1.2e-07 63.2 39 69.2
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 2.1e-07 62.4 60 53.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.6e-07 61.2 147 38.8
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.3e-06 58.9 62 50.0


User provided reference genes

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