Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.9e-144 513.8 308 100.0
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 4.6e-84 315.5 321 67.0
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.4e-51 207.6 338 52.4
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 5.2e-43 179.1 340 43.5
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 9.8e-42 174.9 333 50.2
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 4.7e-36 156.0 334 47.9
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 6.8e-35 152.1 330 41.5
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.2e-34 151.4 341 40.5
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 3.4e-34 149.8 328 41.5
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.7e-34 149.1 322 41.9
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.7e-33 146.4 322 40.7
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.1e-32 144.8 322 40.1
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.1e-32 143.3 331 39.3
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.5e-31 139.4 325 40.3
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 5.9e-31 139.0 350 40.9
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.1e-29 134.8 316 38.9
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.5e-29 133.7 316 38.9
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.5e-29 133.7 316 38.9
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.3e-29 133.3 324 40.4
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 4.0e-27 126.3 317 42.3
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 5.8e-26 122.5 325 39.7
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 3.7e-25 119.8 320 37.5
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 6.4e-25 119.0 323 38.4
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 1.9e-24 117.5 296 41.6
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 3.2e-24 116.7 318 39.0
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.4e-24 115.9 337 36.8
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 5.4e-24 115.9 324 41.4
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 7.0e-24 115.5 330 38.8
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.7e-23 113.6 326 36.8
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.0e-23 112.5 329 36.2
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 7.8e-23 112.1 324 40.1
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.0e-22 111.7 323 39.6
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 5.0e-22 109.4 321 37.1
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 6.6e-22 109.0 314 42.4
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 8.6e-22 108.6 317 36.9
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.1e-21 108.2 330 35.5
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-21 108.2 328 35.7
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.1e-21 108.2 325 39.1
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 7.3e-21 105.5 354 37.6
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.6e-20 103.2 323 37.5
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.1e-19 101.7 345 34.8
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.8e-19 100.9 318 38.1
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.8e-19 100.9 318 38.1
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 3.1e-19 100.1 315 39.7
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 1.5e-18 97.8 340 34.4
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 5.8e-18 95.9 342 34.5
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 9.8e-18 95.1 329 35.3
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 1.7e-17 94.4 343 32.9
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 2.2e-17 94.0 348 37.1
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 2.2e-17 94.0 281 35.9
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.1e-16 91.7 332 34.6
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 1.1e-16 91.7 326 37.7
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.9e-16 90.9 241 39.8
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 5.4e-16 89.4 293 35.5
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 7.0e-16 89.0 268 36.9
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 6.0e-15 85.9 215 41.9
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 6.0e-15 85.9 285 36.8
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 7.8e-15 85.5 338 35.2
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.0e-14 85.1 326 33.7
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 1.0e-14 85.1 317 37.5
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 1.3e-14 84.7 335 33.4
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.3e-14 84.7 346 32.1
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 8.6e-14 82.0 323 34.4
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 8.6e-14 82.0 323 34.4
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.9e-13 80.9 327 34.9
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.3e-13 79.7 322 32.3
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.3e-13 79.7 322 32.3
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 7.3e-13 79.0 333 34.5
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 7.3e-13 79.0 334 34.4
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 6.2e-12 75.9 326 35.3
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 6.2e-12 75.9 326 34.4
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 1.8e-11 74.3 317 34.1
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.1e-11 73.6 321 32.4
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 5.2e-11 72.8 326 34.4
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 3.4e-10 70.1 337 31.2
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 3.4e-10 70.1 337 32.0
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.3e-09 68.2 324 34.3
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.7e-09 67.8 321 31.8
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 3.7e-09 66.6 314 32.8
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 3.7e-09 66.6 317 32.2
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 4.9e-09 66.2 307 32.2
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 4.9e-09 66.2 242 33.9
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 6.4e-09 65.9 277 33.6
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 6.4e-09 65.9 334 33.2
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 6.4e-09 65.9 327 30.3
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 1.4e-08 64.7 351 31.3
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.4e-08 64.7 341 31.1
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.9e-08 64.3 307 31.9
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 1.9e-08 64.3 317 32.5
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.9e-08 64.3 154 40.3
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 2.4e-08 63.9 317 30.0
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 2.4e-08 63.9 332 35.2
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 3.2e-08 63.5 308 31.5
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 3.2e-08 63.5 268 32.8
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 3.2e-08 63.5 320 37.8
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 7.1e-08 62.4 281 37.4
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 7.1e-08 62.4 312 31.7
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 1.2e-07 61.6 308 31.2
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 1.2e-07 61.6 308 31.2
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 1.2e-07 61.6 308 31.2
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 2.1e-07 60.8 310 32.6
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 2.7e-07 60.5 320 31.6
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 3.5e-07 60.1 292 30.5
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 3.5e-07 60.1 316 31.3
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 3.5e-07 60.1 316 31.3
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 3.5e-07 60.1 316 31.3
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 3.5e-07 60.1 327 36.4
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 6.0e-07 59.3 310 32.3
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 7.8e-07 58.9 345 31.6
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 7.8e-07 58.9 336 33.0
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 1.0e-06 58.5 346 31.2
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.7e-06 57.8 332 32.5
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 1.7e-06 57.8 165 38.2
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 2.3e-06 57.4 333 34.8
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.3e-06 57.4 318 30.2
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.3e-06 57.4 318 30.2
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 2.3e-06 57.4 314 29.3
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.3e-06 57.4 329 29.8
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 3.9e-06 56.6 266 31.6
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 3.9e-06 56.6 313 31.6
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 3.9e-06 56.6 313 31.6
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 5.1e-06 56.2 220 33.6
Glyma.07G192300 Glycine max HOM05D004441 ORTHO05D003109 5.1e-06 56.2 318 35.8


User provided reference genes

Program Settings