Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 7.9e-115 417.2 214 100.0
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.4e-63 246.9 222 61.7
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.1e-63 245.4 197 72.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.0e-62 243.0 192 70.3
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 4.5e-62 241.9 225 61.3
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 2.7e-59 232.6 211 61.6
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.6e-57 226.1 219 60.3
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-56 223.8 216 60.2
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.3e-56 223.8 211 61.1
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.1e-55 220.7 212 60.8
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.4e-55 219.5 221 57.9
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.1e-55 218.8 216 58.3
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 9.1e-55 217.6 211 59.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.2e-54 217.2 205 61.0
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.6e-54 216.9 213 58.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.0e-54 216.5 214 57.9
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.7e-54 216.1 198 64.6
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.5e-54 215.7 212 60.8
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.3e-53 213.8 190 67.4
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.7e-53 213.4 212 60.4
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.7e-53 213.4 211 58.3
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.9e-53 212.6 211 57.8
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 3.8e-53 212.2 213 61.5
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.8e-53 212.2 212 57.5
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 9.4e-52 207.6 213 58.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 6.1e-51 204.9 211 60.7
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.3e-50 203.0 196 63.3
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.2e-50 201.8 214 54.2
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.2e-49 200.7 215 58.6
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.6e-49 199.5 217 57.6
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.4e-49 198.7 217 56.7
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 3.7e-48 195.7 216 52.3
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-47 194.1 214 53.7
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-47 193.4 216 54.6
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.0e-47 191.4 217 53.5
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.2e-46 190.7 224 52.7
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.0e-45 187.6 220 50.9
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 8.6e-45 184.5 212 53.8
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.6e-45 184.5 215 55.3
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 8.6e-45 184.5 215 55.3
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.1e-44 184.1 213 54.5
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.9e-44 183.3 213 56.3
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 9.5e-44 181.0 221 53.4
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.2e-43 180.6 215 52.6
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.8e-43 179.5 213 51.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-42 176.8 215 55.8
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 4.0e-42 175.6 216 50.9
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.3e-40 170.6 219 48.9
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.7e-40 170.2 206 50.0
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 8.3e-40 167.9 197 55.3
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.4e-39 167.2 210 51.4
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.4e-39 167.2 196 50.5
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.8e-39 166.8 145 67.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.2e-39 166.0 219 48.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 4.1e-39 165.6 199 53.8
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 7.0e-39 164.9 208 52.4
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 9.2e-39 164.5 194 54.1
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 9.2e-39 164.5 209 47.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.2e-38 164.1 208 50.0
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 2.7e-38 162.9 220 48.6
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.0e-37 161.0 214 49.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.0e-37 161.0 213 49.3
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.0e-37 161.0 215 47.9
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.6e-37 158.3 167 58.7
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.9e-36 156.8 174 56.3
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.3e-36 155.6 205 50.7
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.3e-36 155.6 213 49.3
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 4.3e-36 155.6 202 50.0
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.7e-35 152.1 188 52.7
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 6.2e-35 151.8 214 47.2
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 8.0e-35 151.4 210 47.1
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.0e-34 149.1 200 51.5
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.3e-32 144.1 174 55.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.7e-32 143.7 202 49.5
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.7e-32 142.5 188 48.4
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 8.3e-32 141.4 231 49.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 8.3e-32 141.4 207 45.9
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 8.3e-32 141.4 217 47.0
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.1e-31 141.0 214 45.8
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.4e-31 140.6 185 49.2
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.4e-31 140.6 218 47.2
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 4.1e-31 139.0 223 48.4
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 9.2e-31 137.9 178 53.9
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.2e-30 137.5 187 49.7
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.7e-30 136.3 224 44.2
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 3.5e-30 136.0 209 42.1
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 6.0e-30 135.2 199 49.7
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 7.8e-30 134.8 217 46.1
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.3e-29 134.0 218 43.1
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.3e-29 134.0 208 45.7
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.3e-29 133.3 200 46.0
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 2.5e-28 129.8 199 44.7
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.5e-28 129.8 217 46.5
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.3e-28 129.4 176 47.7
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 8.1e-27 124.8 214 44.9
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.4e-26 124.0 212 45.3
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.0e-26 122.5 186 48.4
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-25 120.9 165 49.1
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.6e-25 119.8 190 44.7
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 5.8e-25 118.6 210 44.8
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.2e-24 116.7 177 45.2
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.7e-24 115.9 172 48.8
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 6.4e-24 115.2 206 42.7
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 8.3e-24 114.8 178 44.9
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.9e-23 113.6 170 48.2
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 9.2e-23 111.3 148 48.6
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.2e-22 110.9 199 43.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.6e-22 110.5 201 45.3
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.0e-21 107.8 216 40.7
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.0e-21 107.8 195 39.0
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.0e-21 107.8 195 45.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.3e-21 107.5 186 44.1
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 5.1e-21 105.5 183 42.1
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 5.1e-21 105.5 190 40.0
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 4.3e-20 102.4 185 41.6
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 5.6e-20 102.1 115 52.2
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 5.6e-20 102.1 186 39.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 9.5e-20 101.3 186 39.2
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 9.5e-20 101.3 186 39.2
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.2e-19 100.9 192 38.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.2e-19 100.9 212 38.2
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 2.8e-19 99.8 199 39.7
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 2.8e-19 99.8 186 39.2
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 6.2e-19 98.6 199 39.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 6.2e-19 98.6 199 38.2
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 6.2e-19 98.6 199 38.2
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 8.1e-19 98.2 193 39.4
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-18 97.8 198 39.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.8e-18 97.1 175 44.0
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 6.8e-18 95.1 186 38.2
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 4.4e-17 92.4 186 40.3
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 5.8e-17 92.0 197 37.1
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.3e-16 90.9 195 36.4
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 1.3e-16 90.9 133 49.6
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.3e-16 90.9 196 39.3
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.2e-16 90.1 189 39.7
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.9e-16 89.7 179 41.3
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.9e-16 89.7 170 41.8
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 4.9e-16 89.0 192 39.1
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 5.4e-15 85.5 191 39.8
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 7.1e-15 85.1 204 36.8
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 4.6e-14 82.4 143 41.3
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.0e-13 81.3 194 35.1
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.7e-13 80.5 204 33.3
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.3e-13 80.1 88 50.0
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-12 77.4 70 57.1
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 2.5e-12 76.6 211 35.5
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 3.3e-12 76.3 73 53.4
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.2e-11 74.3 209 34.4
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.2e-11 74.3 63 60.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 3.6e-11 72.8 172 36.6
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.6e-11 72.8 199 34.7
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 4.7e-11 72.4 162 37.0
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 6.2e-11 72.0 129 43.4
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 8.1e-11 71.6 177 33.9
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 4.0e-10 69.3 68 52.9
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 5.2e-10 68.9 248 31.5
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-09 67.8 172 33.7
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.6e-09 66.6 163 37.4
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 4.4e-09 65.9 226 31.9
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 1.7e-08 63.9 82 43.9
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 3.8e-08 62.8 53 66.0
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 5.4e-07 58.9 122 38.5
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 2.1e-06 57.0 42 59.5
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 7.8e-06 55.1 54 55.6


User provided reference genes

Program Settings