Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 4.9e-202 707.6 360 100.0
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.8e-157 558.9 360 77.8
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 8.8e-143 510.8 340 75.0
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.2e-141 506.1 340 73.2
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 7.0e-140 501.1 339 73.7
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 8.5e-138 494.2 338 72.2
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.1e-137 493.8 350 71.7
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.9e-137 493.0 357 72.0
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.9e-137 493.0 357 72.0
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 3.2e-137 492.3 357 70.9
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 5.5e-137 491.5 332 73.2
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 5.5e-137 491.5 351 71.8
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.6e-136 490.0 351 72.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 8.0e-136 487.6 350 71.7
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.4e-135 486.9 325 73.2
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 6.7e-135 484.6 340 69.1
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.0e-134 483.0 351 70.9
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 2.6e-134 482.6 352 71.0
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.7e-133 479.9 344 69.8
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 6.3e-133 478.0 339 69.3
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 7.0e-132 474.6 338 69.8
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 9.1e-132 474.2 338 70.4
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 9.1e-132 474.2 344 69.2
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 4.5e-131 471.9 339 69.3
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 4.5e-131 471.9 318 73.0
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.5e-131 471.9 352 69.6
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.0e-130 470.7 364 66.2
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.1e-129 467.2 340 70.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.2e-129 465.7 348 67.8
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 3.2e-129 465.7 344 67.7
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.6e-128 463.4 339 67.8
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 2.1e-128 463.0 344 66.3
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 2.1e-128 463.0 336 69.3
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 4.0e-127 458.8 313 72.2
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.2e-126 457.2 316 72.2
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.0e-126 456.4 350 63.7
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.6e-126 456.1 338 68.0
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.4e-126 455.7 357 66.1
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 7.5e-126 454.5 345 66.4
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.3e-125 453.8 350 64.0
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.2e-125 453.0 337 68.8
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 2.8e-125 452.6 347 64.0
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.7e-125 452.2 345 65.5
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.7e-125 452.2 333 69.7
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.7e-125 452.2 343 67.3
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 8.3e-125 451.1 350 64.9
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 8.3e-125 451.1 346 65.6
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.1e-124 450.7 343 65.3
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 3.1e-124 449.1 340 67.1
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.1e-124 448.7 350 63.1
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 5.4e-124 448.4 350 63.4
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 5.4e-124 448.4 350 62.9
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.0e-123 446.4 353 63.5
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 3.5e-123 445.7 351 66.4
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.5e-123 445.7 351 64.7
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 4.5e-123 445.3 351 66.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.5e-121 440.3 350 62.9
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 2.5e-121 439.5 345 64.9
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 4.2e-121 438.7 353 63.2
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-120 437.2 353 62.9
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-120 437.2 353 62.9
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.6e-120 436.8 338 64.2
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 4.7e-120 435.3 353 63.2
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 4.7e-120 435.3 353 63.2
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 6.1e-120 434.9 343 64.1
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 6.1e-120 434.9 343 64.1
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 6.1e-120 434.9 343 64.1
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 6.1e-120 434.9 340 64.1
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 4.0e-119 432.2 335 66.9
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 5.2e-119 431.8 351 64.4
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.0e-118 429.9 332 64.8
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 7.5e-118 427.9 338 66.0
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 9.8e-118 427.6 329 65.0
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.3e-117 427.2 319 68.0
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 5.4e-116 421.8 350 61.1
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 7.7e-115 417.9 337 62.3
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 2.3e-114 416.4 336 63.4
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 2.3e-114 416.4 347 62.5
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 3.8e-114 415.6 342 63.2
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-113 414.1 346 62.1
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 2.5e-113 412.9 351 61.5
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 5.5e-113 411.8 330 61.5
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 7.2e-113 411.4 324 64.2
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.6e-112 409.1 344 60.5
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.0e-111 407.5 317 65.3
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-111 407.1 341 61.0
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.4e-111 407.1 341 61.0
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.8e-111 406.8 324 63.6
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 8.9e-111 404.4 355 60.6
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 7.5e-110 401.4 279 73.1
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.2e-109 399.8 313 63.6
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 6.3e-109 398.3 350 59.4
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.2e-107 394.0 351 62.1
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 1.6e-107 393.7 326 60.4
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.3e-106 389.8 343 57.7
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.8e-104 382.9 348 56.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.8e-104 382.9 329 62.0
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 2.3e-103 379.8 345 60.0
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.3e-103 379.8 284 68.7
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.8e-103 378.3 342 57.3
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 3.4e-102 375.9 410 51.7
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.4e-102 375.6 348 54.9
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 7.5e-102 374.8 314 61.8
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 9.8e-102 374.4 339 57.5
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-101 374.0 350 56.0
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.7e-101 373.6 337 57.9
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 3.7e-101 372.5 257 72.0
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 3.7e-101 372.5 349 55.9
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 6.4e-101 371.7 271 67.2
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.1e-100 370.9 348 54.9
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.4e-100 369.8 256 69.9
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 4.6e-99 365.5 355 56.6
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.3e-97 359.4 331 55.6
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 6.2e-96 355.1 314 61.1
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.5e-94 350.5 348 54.6
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.4e-92 344.0 339 51.9
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 4.1e-92 342.4 316 54.7
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 9.2e-92 341.3 348 51.7
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.7e-91 339.7 337 49.9
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.0e-90 336.3 343 53.4
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 3.0e-90 336.3 348 51.1
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 1.1e-89 334.3 339 53.7
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 3.3e-89 332.8 346 51.4
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 9.5e-89 331.3 316 53.2
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.5e-89 331.3 348 50.3
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.1e-88 330.1 339 52.2
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.1e-88 330.1 307 56.0
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 4.7e-88 328.9 332 50.6
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 4.7e-88 328.9 339 52.5
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.1e-87 326.2 331 50.2
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 3.1e-87 326.2 351 51.9
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 5.2e-87 325.5 331 50.5
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 2.6e-86 323.2 348 50.3
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.6e-86 323.2 271 60.5
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.7e-85 320.5 337 49.3
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.7e-85 320.5 332 49.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.7e-85 320.5 332 49.4
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 4.9e-85 318.9 285 58.2
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 3.2e-84 316.2 337 48.4
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.6e-83 313.9 354 47.7
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 3.5e-83 312.8 344 48.0
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.3e-82 310.1 336 49.4
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.6e-81 304.7 222 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 6.2e-80 302.0 339 47.8
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.8e-79 300.4 325 47.1
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.4e-76 290.8 271 56.5
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.4e-76 290.0 179 76.5
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.7e-75 286.6 189 69.8
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 2.4e-71 273.5 189 67.2
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-70 271.2 191 64.9
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.4e-70 269.2 190 68.9
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.8e-70 268.9 189 65.6
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 3.0e-66 256.5 325 44.6
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 8.1e-64 248.4 226 57.1
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 5.8e-62 242.3 182 66.5
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.9e-60 237.3 190 58.9
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.5e-54 217.6 184 56.0
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 3.4e-54 216.5 227 55.1
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 1.7e-53 214.2 238 47.9
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 7.1e-52 208.8 167 64.1
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.2e-51 208.0 335 38.2
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 6.5e-45 185.7 337 36.2
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 2.6e-38 163.7 172 54.1
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 2.1e-35 154.1 172 45.3
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 7.4e-33 145.6 104 69.2
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 4.8e-32 142.9 166 48.2
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 2.0e-30 137.5 92 69.6
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 3.4e-30 136.7 89 66.3
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 1.0e-26 125.2 95 65.3
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 2.6e-25 120.6 338 31.7
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 3.7e-24 116.7 81 61.7
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-23 115.2 77 72.7
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 1.1e-23 115.2 80 63.8
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-20 105.1 76 64.5
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.6e-17 94.0 75 64.0
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 2.7e-14 84.0 52 76.9
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 5.9e-14 82.8 68 61.8
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.7e-13 81.3 48 75.0
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 2.2e-13 80.9 57 64.9
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-11 75.1 74 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.7e-08 63.5 69 46.4


User provided reference genes

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