Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 3.4e-58 228.0 109 100.0
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.0e-30 136.7 110 67.3
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.4e-29 131.7 111 65.8
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.2e-28 129.0 111 64.9
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.1e-27 125.2 112 61.6
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 5.4e-27 124.4 108 61.1
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 7.0e-27 124.0 109 63.3
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 7.0e-27 124.0 106 56.6
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 9.1e-27 123.6 109 62.4
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.9e-25 118.6 108 59.3
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.9e-25 118.6 106 62.3
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.8e-25 118.2 103 60.2
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 5.0e-25 117.9 112 55.4
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.0e-25 117.9 106 59.4
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.5e-25 117.5 108 58.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 6.5e-25 117.5 108 58.3
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 8.6e-25 117.1 108 54.6
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.5e-24 116.3 108 54.6
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.9e-24 115.9 108 57.4
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.5e-24 115.5 104 59.6
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.3e-24 115.2 109 57.8
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.3e-24 115.2 107 57.0
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.3e-24 115.2 108 58.3
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 3.6e-23 111.7 107 55.1
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.6e-23 111.7 104 56.7
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.8e-22 109.4 108 56.5
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.0e-22 108.6 108 55.6
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.0e-22 108.6 110 54.5
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 4.0e-22 108.2 108 54.6
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.5e-21 106.3 107 56.1
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.5e-21 106.3 110 50.9
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 5.7e-21 104.4 108 55.6
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.9e-20 101.3 110 52.7
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 8.3e-20 100.5 105 51.4
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 1.4e-19 99.8 108 50.9
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.4e-19 99.0 115 47.8
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 4.1e-19 98.2 104 51.9
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.0e-19 97.4 110 55.5
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 7.0e-19 97.4 110 48.2
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 9.2e-19 97.1 105 49.5
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 9.2e-19 97.1 116 48.3
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.7e-18 95.5 102 52.0
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.5e-18 95.1 105 51.4
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 4.5e-18 94.7 111 49.5
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.5e-18 94.7 107 48.6
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 5.9e-18 94.4 107 48.6
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 7.8e-18 94.0 105 49.5
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 7.8e-18 94.0 104 45.2
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.3e-17 92.4 102 52.0
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 2.3e-17 92.4 109 52.3
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.6e-17 90.9 105 48.6
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.1e-16 90.1 109 49.5
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 1.5e-16 89.7 117 47.0
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 1.5e-16 89.7 106 48.1
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.9e-16 89.4 107 46.7
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 5.6e-16 87.8 107 49.5
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 9.5e-16 87.0 109 45.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.6e-15 86.3 109 48.6
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.6e-15 86.3 109 48.6
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 1.6e-15 86.3 109 47.7
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 2.1e-15 85.9 109 45.0
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 3.6e-15 85.1 109 46.8
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 4.7e-15 84.7 109 45.9
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 6.1e-15 84.3 110 44.5
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 8.0e-15 84.0 106 41.5
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 8.0e-15 84.0 109 46.8
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.0e-14 83.6 107 49.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 3.0e-14 82.0 108 46.3
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.0e-14 82.0 101 49.5
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 6.8e-14 80.9 108 43.5
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 6.8e-14 80.9 107 48.6
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 8.9e-14 80.5 111 42.3
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.2e-13 80.1 106 48.1
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 1.5e-13 79.7 109 43.1
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.0e-13 79.3 104 50.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.6e-13 79.0 106 38.7
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.6e-13 79.0 107 45.8
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.4e-13 78.2 122 44.3
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 5.8e-13 77.8 106 39.6
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 7.5e-13 77.4 107 46.7
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-12 76.6 108 46.3
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-12 76.6 108 46.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.7e-12 76.3 108 42.6
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 2.9e-12 75.5 109 45.0
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 6.4e-12 74.3 112 42.0
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 6.4e-12 74.3 111 41.4
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 6.4e-12 74.3 112 42.0
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 6.4e-12 74.3 112 42.0
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.9e-11 72.8 111 40.5
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.4e-11 72.4 117 38.5
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.4e-11 72.4 111 43.2
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 5.4e-11 71.2 91 47.3
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 5.4e-11 71.2 107 43.9
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.2e-10 70.1 106 41.5
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 2.0e-10 69.3 127 40.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.5e-10 68.6 103 41.7
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 7.8e-10 67.4 108 38.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.0e-09 67.0 108 41.7
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.0e-09 67.0 107 43.0
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.7e-09 66.2 120 37.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.0e-09 65.5 108 40.7
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.9e-09 65.1 108 38.0
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 3.9e-09 65.1 107 43.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 3.9e-09 65.1 125 37.6
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 6.6e-09 64.3 71 50.7
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 6.6e-09 64.3 104 42.3
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 8.6e-09 63.9 106 39.6
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-08 63.5 111 36.0
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.5e-08 63.2 104 40.4
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.9e-08 62.8 106 39.6
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.5e-08 62.4 108 38.9
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 3.3e-08 62.0 107 39.3
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 5.6e-08 61.2 89 41.6
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 5.6e-08 61.2 110 36.4
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.5e-08 60.5 109 38.5
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.5e-08 60.5 109 38.5
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.5e-08 60.5 106 38.7
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.5e-08 60.5 109 37.6
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.6e-07 59.7 107 39.3
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 2.1e-07 59.3 105 41.0
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.8e-07 58.9 102 39.2
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.8e-07 58.9 102 39.2
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 4.7e-07 58.2 102 40.2
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.2e-07 57.8 109 37.6
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 6.2e-07 57.8 102 38.2
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 6.2e-07 57.8 103 36.9
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 8.0e-07 57.4 105 39.0
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-06 57.0 103 39.8
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.4e-06 56.6 107 34.6
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 1.8e-06 56.2 104 37.5
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 2.3e-06 55.8 101 37.6
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 3.1e-06 55.5 107 35.5
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 3.1e-06 55.5 102 36.3
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 5.2e-06 54.7 106 38.7


User provided reference genes

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