Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 7.2e-72 273.9 144 100.0
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.2e-36 156.0 111 74.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.1e-35 153.7 111 74.8
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.1e-34 149.4 110 73.6
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.5e-32 143.3 110 69.1
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 4.7e-31 138.3 113 66.4
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 3.4e-29 132.1 95 69.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 4.4e-29 131.7 102 67.6
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 6.4e-28 127.9 98 67.3
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-27 127.1 101 66.3
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.1e-27 127.1 101 66.3
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.1e-27 127.1 113 62.8
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.1e-27 125.2 104 61.5
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 5.4e-27 124.8 102 64.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.2e-27 124.0 101 65.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-26 123.6 99 66.7
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.2e-26 123.6 116 60.3
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.6e-26 123.2 102 62.7
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.6e-26 123.2 102 62.7
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.8e-26 120.9 102 61.8
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.7e-25 119.8 103 60.2
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.7e-25 119.8 103 60.2
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 3.9e-25 118.6 110 61.8
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 6.6e-25 117.9 114 57.9
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 4.3e-24 115.2 112 55.4
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.3e-24 115.2 152 49.3
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.3e-24 115.2 115 54.8
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 7.3e-24 114.4 112 58.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.2e-23 113.6 112 55.4
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.2e-23 113.6 105 58.1
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-23 112.8 117 59.0
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-23 112.8 117 59.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.1e-23 112.8 105 55.2
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.8e-23 112.5 99 61.6
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 4.7e-23 111.7 79 72.2
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 6.2e-23 111.3 102 60.8
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.1e-22 110.5 104 59.6
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.4e-22 110.2 89 65.2
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.8e-22 109.8 79 69.6
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 5.2e-22 108.2 111 55.0
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.6e-21 105.9 117 55.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.4e-21 105.5 104 51.0
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.6e-21 104.4 102 51.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 9.9e-21 104.0 113 53.1
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 9.9e-21 104.0 87 58.6
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 9.9e-21 104.0 109 52.3
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.2e-20 102.8 106 51.9
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.2e-20 102.8 104 50.0
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.9e-20 102.4 112 51.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.9e-20 102.4 110 51.8
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 4.9e-20 101.7 105 53.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 4.9e-20 101.7 105 54.3
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.1e-19 100.5 94 56.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.4e-19 100.1 117 48.7
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.4e-19 99.4 91 56.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.2e-19 99.0 119 48.7
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 5.4e-19 98.2 103 57.3
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.3e-19 97.4 119 47.1
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 9.3e-19 97.4 103 49.5
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-18 97.1 119 49.6
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.1e-18 96.3 95 56.8
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.1e-18 96.3 110 46.4
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.7e-18 95.9 114 48.2
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.7e-18 95.9 96 58.3
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.7e-18 95.9 96 57.3
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.5e-18 95.5 87 54.0
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 3.5e-18 95.5 113 46.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.6e-18 95.1 96 57.3
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.0e-17 94.0 93 51.6
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.3e-17 93.6 71 63.4
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-17 93.6 83 54.2
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.7e-17 93.2 100 50.0
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.7e-17 93.2 94 54.3
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 3.0e-17 92.4 99 46.5
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 3.0e-17 92.4 100 45.0
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 3.0e-17 92.4 100 45.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.9e-17 92.0 94 53.2
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.9e-16 89.7 106 42.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.9e-16 89.7 101 45.5
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.9e-16 89.7 85 49.4
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 2.5e-16 89.4 103 43.7
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.5e-16 89.4 117 43.6
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 2.5e-16 89.4 92 52.2
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.3e-16 89.0 105 43.8
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.3e-16 89.0 98 49.0
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 4.3e-16 88.6 97 51.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 7.3e-16 87.8 89 49.4
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-15 86.7 108 47.2
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-15 86.7 108 47.2
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.6e-15 86.7 94 50.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.8e-15 85.9 92 51.1
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 2.8e-15 85.9 97 49.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.8e-15 85.9 102 47.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.6e-15 85.5 95 44.2
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 4.8e-15 85.1 97 50.5
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 6.2e-15 84.7 107 49.5
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.1e-14 84.0 97 49.5
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.1e-14 84.0 97 49.5
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.8e-14 83.2 98 53.1
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 3.1e-14 82.4 96 50.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 3.1e-14 82.4 89 52.8
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.0e-14 82.0 75 53.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 4.0e-14 82.0 95 46.3
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.0e-14 82.0 104 49.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 5.3e-14 81.6 97 47.4
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 5.3e-14 81.6 97 47.4
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 5.3e-14 81.6 88 45.5
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 9.0e-14 80.9 97 48.5
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 9.0e-14 80.9 96 46.9
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.2e-13 80.5 107 46.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 3.4e-13 79.0 96 47.9
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 3.4e-13 79.0 97 46.4
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 3.4e-13 79.0 97 48.5
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 7.6e-13 77.8 79 48.1
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.9e-12 75.9 63 61.9
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.9e-12 75.9 76 48.7
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 3.8e-12 75.5 61 57.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 3.8e-12 75.5 84 47.6
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 3.8e-12 75.5 72 52.8
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 3.8e-12 75.5 78 47.4
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 8.4e-12 74.3 80 46.2
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.1e-11 73.9 108 44.4
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.1e-11 73.9 89 43.8
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.9e-11 73.2 75 48.0
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.2e-11 72.4 94 42.6
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.2e-11 72.0 109 43.1
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.2e-11 72.0 109 43.1
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 5.4e-11 71.6 108 41.7
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 5.4e-11 71.6 89 42.7
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 7.1e-11 71.2 108 43.5
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.1e-11 71.2 84 46.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.6e-10 70.1 72 48.6
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.1e-10 69.7 72 47.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 6.0e-10 68.2 81 43.2
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 6.0e-10 68.2 91 44.0
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.0e-09 67.4 134 31.3
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.3e-09 67.0 81 44.4
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.3e-09 67.0 57 54.4
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.3e-09 66.2 99 42.4
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 3.0e-09 65.9 74 51.4
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 3.9e-09 65.5 113 34.5
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 5.1e-09 65.1 86 41.9
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 5.1e-09 65.1 86 41.9
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 6.7e-09 64.7 86 40.7
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 6.7e-09 64.7 86 40.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.1e-08 63.9 82 47.6
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.1e-08 63.9 82 47.6
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.1e-08 63.9 82 47.6
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 1.5e-08 63.5 82 47.6
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.5e-08 63.5 81 40.7
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.5e-08 62.8 70 50.0
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.3e-08 62.4 98 36.7
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 5.6e-08 61.6 100 39.0
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 9.6e-08 60.8 93 36.6
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 9.6e-08 60.8 93 36.6
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.3e-07 60.5 103 35.0
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.3e-07 60.5 103 35.0
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 1.6e-07 60.1 101 35.6
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.1e-07 59.7 101 35.6
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.1e-07 59.7 71 46.5
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 2.8e-07 59.3 68 47.1
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 6.2e-07 58.2 78 43.6
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.2e-07 58.2 65 52.3
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 8.1e-07 57.8 64 53.1
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.1e-06 57.4 81 40.7
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.1e-06 57.4 80 43.8
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 6.9e-06 54.7 76 40.8


User provided reference genes

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