Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 6.1e-36 153.7 80 100.0
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 3.0e-35 151.4 80 98.8
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 2.4e-24 115.2 81 75.3
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 6.9e-24 113.6 75 74.7
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 1.7e-22 109.0 76 73.7
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 3.8e-22 107.8 78 71.8
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 5.5e-21 104.0 76 71.1
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 7.2e-21 103.6 80 63.8
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 1.2e-20 102.8 79 63.3
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 7.9e-20 100.1 80 63.8
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.8e-19 99.0 76 69.7
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 1.8e-19 99.0 79 63.3
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 3.0e-19 98.2 79 65.8
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 5.1e-19 97.4 77 61.0
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.5e-18 95.9 79 59.5
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 2.0e-18 95.5 80 62.5
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 2.6e-18 95.1 80 60.0
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 3.3e-18 94.7 80 62.5
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 5.7e-18 94.0 79 60.8
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 5.7e-18 94.0 80 60.0
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 5.7e-18 94.0 80 60.0
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 7.4e-18 93.6 78 61.5
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.7e-17 92.4 78 60.3
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 4.8e-17 90.9 80 60.0
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.4e-16 89.4 78 65.4
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.4e-16 89.4 78 65.4
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 1.8e-16 89.0 78 64.1
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.8e-16 89.0 75 60.0
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 9.1e-16 86.7 86 58.1
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 4.5e-15 84.3 79 59.5
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 5.9e-15 84.0 77 57.1
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 5.9e-15 84.0 75 58.7
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 1.0e-14 83.2 71 62.0
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 1.7e-14 82.4 75 56.0
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 2.9e-14 81.6 77 59.7
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.9e-14 81.6 79 57.0
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 1.1e-13 79.7 75 56.0
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 1.9e-13 79.0 79 54.4
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 2.5e-13 78.6 75 53.3
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 3.2e-13 78.2 77 58.4
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 4.2e-13 77.8 75 57.3
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 5.5e-13 77.4 79 53.2
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 7.2e-13 77.0 77 50.6
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 7.2e-13 77.0 78 53.8
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 1.2e-12 76.3 75 56.0
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 1.2e-12 76.3 66 57.6
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 2.7e-12 75.1 75 56.0
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 2.7e-12 75.1 79 49.4
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 1.4e-11 72.8 80 50.0
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 1.4e-11 72.8 79 50.6
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 1.8e-11 72.4 80 52.5
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 4.0e-11 71.2 80 50.0
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 5.2e-11 70.9 81 49.4
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 5.2e-11 70.9 80 48.8
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 8.8e-11 70.1 81 50.6
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 1.1e-10 69.7 86 47.7
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 1.5e-10 69.3 75 50.7
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 2.6e-10 68.6 81 49.4
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 2.6e-10 68.6 79 50.6
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 3.3e-10 68.2 77 48.1
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 4.4e-10 67.8 75 49.3
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 5.7e-10 67.4 72 54.2
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 9.7e-10 66.6 81 49.4
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 2.2e-09 65.5 80 48.8
Gohir.D13G171150 Gossypium hirsutum HOM05D007037 ORTHO05D006691 2.8e-09 65.1 78 47.4
Zm00001eb048920 Zea mays HOM05D007037 ORTHO05D006691 2.8e-09 65.1 73 47.9
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 3.7e-09 64.7 77 48.1
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 3.7e-09 64.7 77 49.4
Gorai.013G189700 Gossypium raimondii HOM05D007037 ORTHO05D006691 4.8e-09 64.3 78 50.0
Gohir.D11G101450 Gossypium hirsutum HOM05D007037 ORTHO05D006691 6.3e-09 63.9 77 46.8
Gorai.007G108200 Gossypium raimondii HOM05D007037 ORTHO05D006691 6.3e-09 63.9 77 46.8
HanXRQChr16g0506491 Helianthus annuus HOM05D007037 ORTHO05D006691 8.2e-09 63.5 77 45.5
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 1.1e-08 63.2 79 48.1
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 1.8e-08 62.4 77 49.4
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 1.8e-08 62.4 76 47.4
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 2.4e-08 62.0 79 46.8
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 3.1e-08 61.6 76 47.4
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 3.1e-08 61.6 79 46.8
Gohir.D13G171533 Gossypium hirsutum HOM05D007037 ORTHO05D006691 4.1e-08 61.2 80 48.8
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 4.1e-08 61.2 80 51.2
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 5.3e-08 60.8 76 46.1
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 7.0e-08 60.5 76 46.1
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 7.0e-08 60.5 81 48.1
Rhsim02G0106600 Rhododendron simsii HOM05D007037 ORTHO05D006691 9.1e-08 60.1 91 41.8
Gohir.A11G096766 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.2e-07 59.7 77 44.2
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 1.2e-07 59.7 77 45.5
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 2.0e-07 58.9 77 48.1
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 2.0e-07 58.9 81 45.7
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 3.5e-07 58.2 79 45.6
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 3.5e-07 58.2 77 45.5
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 4.5e-07 57.8 82 42.7
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 5.9e-07 57.4 85 43.5
vmacro15807 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 7.7e-07 57.0 88 39.8
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 1.3e-06 56.2 77 44.2
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 1.3e-06 56.2 79 44.3
arahy.Tifrunner.gnm1.ann1.CZMF37 Arachis hypogaea HOM05D007037 ORTHO05D006691 1.7e-06 55.8 81 44.4
CiPaw.03G159600 Carya illinoinensis HOM05D007037 ORTHO05D006691 2.2e-06 55.5 83 47.0
Potri.014G153900 Populus trichocarpa HOM05D009550 ORTHO05D006691 3.8e-06 54.7 85 43.5
Aqoxy4G01827 Aquilegia oxysepala HOM05D009550 ORTHO05D006691 6.5e-06 53.9 84 42.9


User provided reference genes

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