Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 3.8e-170 601.7 361 100.0
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 3.1e-63 246.5 344 58.1
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 5.3e-63 245.7 344 58.1
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 9.0e-63 245.0 361 48.8
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 3.4e-62 243.0 293 59.4
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.6e-62 241.9 348 57.5
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.2e-61 240.4 326 57.4
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 4.9e-61 239.2 324 58.6
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 8.4e-61 238.4 339 56.0
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-59 233.8 351 58.4
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.0e-58 231.5 302 54.3
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.3e-58 231.1 336 56.8
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.3e-58 231.1 351 57.5
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.8e-58 230.7 320 54.1
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 6.7e-58 228.8 312 57.7
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.3e-57 226.5 341 59.5
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 3.3e-57 226.5 344 55.8
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 4.3e-57 226.1 279 64.9
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-56 224.6 344 54.9
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 3.1e-55 219.9 357 49.3
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.3e-55 219.2 330 54.8
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 5.3e-55 219.2 330 53.0
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.9e-55 218.8 323 53.6
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.2e-54 218.0 323 53.6
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.5e-54 217.6 315 57.8
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 2.6e-54 216.9 352 46.6
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.4e-54 216.5 337 51.3
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 4.5e-54 216.1 380 53.2
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.0e-53 214.9 314 55.4
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.3e-53 214.5 321 45.8
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.2e-53 213.8 317 52.4
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.9e-53 213.4 336 54.8
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.9e-53 213.4 329 56.2
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 5.0e-53 212.6 317 47.6
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 6.5e-53 212.2 351 50.4
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.9e-52 210.7 334 51.5
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 2.5e-52 210.3 317 53.0
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 3.2e-52 209.9 315 57.1
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 4.2e-52 209.5 352 54.5
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 4.2e-52 209.5 321 46.4
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 7.2e-52 208.8 338 52.1
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 7.2e-52 208.8 343 49.9
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.2e-51 208.0 319 50.8
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.2e-51 208.0 344 55.8
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 7.9e-51 205.3 308 48.4
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.3e-50 203.8 349 42.1
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 3.9e-50 203.0 309 54.0
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.1e-50 202.6 363 44.6
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 6.7e-50 202.2 241 53.5
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 8.7e-50 201.8 327 52.6
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.1e-49 201.4 340 52.9
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.5e-49 201.1 327 52.6
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 3.3e-49 199.9 342 52.0
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 3.3e-49 199.9 354 49.7
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.3e-49 199.5 343 53.1
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 5.7e-49 199.1 310 45.5
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 7.4e-49 198.7 373 45.6
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 9.7e-49 198.4 334 55.1
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.3e-48 198.0 352 51.4
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 3.7e-48 196.4 296 56.8
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 3.7e-48 196.4 323 55.7
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.7e-48 196.4 334 52.4
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 6.3e-48 195.7 351 54.1
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 8.2e-48 195.3 327 54.4
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 8.2e-48 195.3 327 54.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 8.2e-48 195.3 327 54.4
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 8.2e-48 195.3 340 51.5
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-47 194.9 328 52.1
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.1e-47 194.9 352 49.4
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.4e-47 193.7 303 55.1
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.4e-47 193.7 345 49.9
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 3.1e-47 193.4 358 45.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 4.1e-47 193.0 357 48.7
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 9.1e-47 191.8 336 52.1
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 9.1e-47 191.8 343 45.8
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.5e-46 191.0 318 55.7
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.0e-46 190.7 363 46.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 2.6e-46 190.3 340 49.4
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 7.7e-46 188.7 359 46.8
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.9e-45 186.8 334 48.2
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 5.0e-45 186.0 385 48.1
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 8.5e-45 185.3 305 46.9
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.1e-44 184.9 323 51.1
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.1e-44 184.9 303 51.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.4e-44 184.5 334 47.6
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.4e-44 184.5 358 52.2
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 5.5e-44 182.6 332 45.8
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 7.2e-44 182.2 364 49.2
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 9.4e-44 181.8 366 45.4
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.6e-43 181.0 332 51.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 6.1e-43 179.1 358 47.2
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.1e-43 179.1 328 43.0
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.0e-42 178.3 319 45.5
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.0e-42 178.3 302 44.7
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.3e-42 177.2 354 43.5
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.9e-42 176.4 354 50.3
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.7e-42 175.6 328 43.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.1e-41 174.9 353 50.7
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.5e-41 174.5 325 51.7
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 2.0e-41 174.1 334 48.8
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 3.3e-41 173.3 394 43.4
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 3.3e-41 173.3 268 52.2
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 4.4e-41 172.9 340 48.8
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 7.4e-41 172.2 313 51.4
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 7.4e-41 172.2 302 53.0
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.3e-40 171.4 325 50.2
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 8.2e-40 168.7 329 45.9
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.1e-39 168.3 282 53.9
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.1e-39 168.3 298 45.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.4e-39 167.2 318 48.4
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.4e-39 167.2 318 48.4
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.1e-39 166.8 400 42.0
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.0e-38 164.1 282 56.7
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.4e-38 163.3 306 48.7
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 3.4e-38 163.3 336 52.1
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.3e-37 161.4 307 38.8
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 2.9e-37 160.2 307 50.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.5e-37 159.1 242 59.5
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.1e-36 158.3 275 49.1
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.4e-36 157.9 367 45.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 5.5e-36 156.0 259 52.9
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.6e-35 154.5 356 41.0
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 3.0e-34 150.2 239 56.1
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 5.2e-34 149.4 267 43.4
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 8.8e-34 148.7 297 40.4
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.0e-33 147.5 306 46.4
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 9.7e-33 145.2 209 47.8
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 3.7e-32 143.3 313 47.6
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.7e-29 134.4 378 40.7
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.7e-29 134.4 340 37.9
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.9e-29 133.7 163 56.4
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 5.5e-28 129.4 305 45.2
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.3e-26 124.0 360 41.9
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 3.0e-26 123.6 354 34.5
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.7e-24 117.9 319 42.6
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 3.7e-24 116.7 273 44.7
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 3.1e-23 113.6 228 48.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-22 111.7 277 43.3
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 4.5e-22 109.8 140 52.1
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.7e-21 107.8 280 36.4
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.2e-21 107.5 259 40.5
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.9e-21 107.1 139 49.6
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.5e-20 104.0 142 50.0
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.2e-20 103.2 265 46.4
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 5.5e-20 102.8 141 50.4
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.7e-19 100.5 216 37.5
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 3.6e-19 100.1 290 33.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 4.7e-19 99.8 256 37.1
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 2.8e-16 90.5 333 43.8
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.1e-15 87.0 337 38.3
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 4.5e-14 83.2 335 30.7
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.7e-13 81.3 143 44.1
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.5e-13 79.3 113 46.9
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.0e-10 70.1 89 44.9
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.7e-08 64.7 318 39.3
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 5.4e-07 59.7 242 30.2
AUR62021898 Chenopodium quinoa HOM05D004496 ORTHO05D005513 2.7e-06 57.4 83 49.4


User provided reference genes

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