Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.5e-198 696.0 360 100.0
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 9.7e-142 507.3 359 73.8
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 8.2e-141 504.2 356 72.8
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 4.1e-140 501.9 369 70.5
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 4.1e-140 501.9 363 71.1
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.2e-139 500.4 360 70.6
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 2.6e-139 499.2 356 72.8
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 2.6e-139 499.2 356 72.8
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 5.0e-138 495.0 365 68.8
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 8.5e-138 494.2 307 78.2
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 8.5e-138 494.2 358 70.7
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 4.2e-137 491.9 352 71.0
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 1.6e-136 490.0 364 68.4
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.1e-136 489.6 353 71.1
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 2.7e-136 489.2 353 71.4
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.0e-135 487.3 351 70.9
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.4e-135 486.9 349 71.9
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.3e-135 486.1 363 68.3
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 5.2e-135 485.0 354 69.8
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 5.2e-135 485.0 349 70.5
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 2.0e-134 483.0 358 69.0
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 3.3e-134 482.3 371 68.2
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.3e-134 482.3 357 68.1
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 4.4e-134 481.9 358 69.0
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 5.7e-134 481.5 330 73.0
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 7.4e-134 481.1 356 68.5
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 9.7e-134 480.7 323 75.2
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.7e-133 479.9 358 69.0
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 2.2e-133 479.6 345 69.9
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 2.2e-133 479.6 324 73.5
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 2.8e-133 479.2 358 73.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 4.8e-133 478.4 341 69.8
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.1e-132 477.2 355 67.3
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 1.8e-132 476.5 355 68.5
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 3.1e-132 475.7 345 71.6
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 3.1e-132 475.7 363 67.2
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 4.1e-132 475.3 364 68.1
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 4.1e-132 475.3 374 66.3
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.0e-131 473.0 353 70.5
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 2.0e-131 473.0 309 78.6
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 2.0e-131 473.0 309 75.4
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.7e-130 469.9 358 67.3
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 2.2e-130 469.5 351 67.5
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 2.2e-130 469.5 314 72.6
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 3.8e-130 468.8 347 72.3
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 5.0e-130 468.4 334 71.0
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 5.0e-130 468.4 307 75.2
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 6.5e-130 468.0 306 75.2
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 6.5e-130 468.0 354 66.9
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.1e-129 467.2 321 72.6
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 2.5e-129 466.1 302 75.5
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 5.5e-129 464.9 318 71.7
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 7.2e-129 464.5 314 73.2
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 7.2e-129 464.5 348 67.5
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 9.4e-129 464.2 341 69.8
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.2e-128 463.8 307 72.6
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 2.1e-128 463.0 302 73.8
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 2.7e-128 462.6 319 73.4
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 3.6e-128 462.2 319 72.1
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 4.7e-128 461.8 351 68.4
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 6.1e-128 461.5 328 70.1
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 6.1e-128 461.5 332 68.4
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.0e-127 460.7 352 69.0
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.0e-127 460.7 314 71.7
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.0e-127 459.1 316 73.1
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.0e-127 458.8 325 72.0
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 6.8e-127 458.0 357 65.8
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 8.8e-127 457.6 348 67.2
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.2e-126 457.2 336 69.0
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 2.6e-126 456.1 329 69.9
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 3.4e-126 455.7 325 72.0
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 3.4e-126 455.7 353 67.1
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 4.4e-126 455.3 301 76.1
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.7e-125 453.4 313 75.1
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 4.8e-125 451.8 325 69.8
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 4.8e-125 451.8 303 73.3
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.8e-124 449.9 368 64.9
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 2.4e-124 449.5 345 66.4
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 3.5e-123 445.7 319 69.6
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 7.7e-123 444.5 311 70.1
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 7.7e-123 444.5 319 69.6
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 1.7e-122 443.4 319 69.9
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.1e-121 440.7 314 69.7
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 5.5e-121 438.3 393 60.3
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 9.4e-121 437.6 263 79.8
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 6.1e-120 434.9 348 64.4
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.0e-119 434.1 284 73.9
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 8.8e-119 431.0 328 65.5
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 4.4e-118 428.7 328 65.9
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.8e-116 423.3 226 88.5
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.4e-116 422.9 361 62.3
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 8.6e-114 414.5 329 66.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 3.6e-112 409.1 316 64.9
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 5.7e-110 401.7 362 59.9
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.8e-110 401.0 326 65.3
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 8.3e-109 397.9 350 60.6
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 8.3e-109 397.9 376 56.9
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 5.4e-108 395.2 284 71.5
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 1.6e-107 393.7 358 59.2
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.5e-105 387.1 252 71.4
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 2.5e-105 386.3 362 56.6
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.7e-101 373.6 293 66.2
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 6.4e-101 371.7 252 68.7
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.4e-100 369.8 297 62.6
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.7e-98 363.6 263 65.4
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.6e-96 355.9 287 64.1
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 8.9e-95 351.3 220 74.1
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 8.3e-93 344.7 294 60.9
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 2.9e-85 319.7 319 55.8
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.9e-84 317.0 245 64.9
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 2.5e-81 306.6 358 50.6
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.2e-80 304.3 252 61.1
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 8.9e-79 298.1 276 58.0
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.2e-70 271.2 238 62.2
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 2.0e-70 270.4 214 60.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 6.4e-69 265.4 225 61.8
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.2e-68 263.1 258 51.9
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 7.9e-67 258.5 241 58.9
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.4e-63 246.9 205 56.6
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.5e-62 242.7 211 55.9
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.9e-60 237.3 190 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.4e-60 236.9 200 56.5
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.4e-60 236.9 210 56.7
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.6e-56 224.2 195 56.4
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 8.1e-56 221.9 330 43.0
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 8.4e-53 211.8 190 54.7
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 5.3e-47 192.6 120 76.7
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.2e-45 187.2 290 44.8
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.6e-40 171.0 185 60.5
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.2e-38 164.9 112 66.1
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.7e-37 161.0 145 53.1
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 7.2e-36 155.6 87 78.2
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.8e-34 151.0 99 69.7
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 5.3e-31 139.4 114 64.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.2e-29 134.0 68 89.7
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 2.0e-22 110.9 110 54.5
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 4.0e-18 96.7 98 54.1
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.1e-17 95.1 65 66.2
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.3e-13 81.6 50 78.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 3.8e-13 80.1 37 91.9
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 3.8e-13 80.1 149 40.3
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 5.0e-13 79.7 94 51.1
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 5.5e-12 76.3 81 46.9
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 8.8e-10 68.9 55 63.6
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.7e-06 57.4 55 52.7


User provided reference genes

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