Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.6e-61 239.2 117 100.0
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.0e-47 193.4 114 80.7
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.7e-47 192.6 114 83.3
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 2.2e-47 192.2 114 82.5
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 3.8e-47 191.4 109 85.3
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 1.5e-46 189.5 113 81.4
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 1.5e-46 189.5 114 81.6
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.9e-46 189.1 111 81.1
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.9e-46 189.1 114 76.3
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.5e-46 188.7 112 79.5
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 4.2e-46 188.0 112 78.6
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 5.5e-46 187.6 113 77.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 9.4e-46 186.8 109 81.7
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.2e-45 186.4 114 76.3
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.6e-45 186.0 114 75.4
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.1e-45 185.7 114 75.4
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.7e-45 185.3 111 80.2
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.7e-45 185.3 109 80.7
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.6e-45 184.9 113 77.0
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 4.7e-45 184.5 114 78.1
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.4e-44 183.0 110 79.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.8e-44 182.6 112 77.7
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 2.3e-44 182.2 117 76.1
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 3.0e-44 181.8 114 77.2
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 3.0e-44 181.8 114 75.4
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.0e-44 181.4 112 76.8
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 5.2e-44 181.0 114 73.7
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 6.8e-44 180.6 114 74.6
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 6.8e-44 180.6 112 76.8
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 8.8e-44 180.3 114 73.7
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 8.8e-44 180.3 112 76.8
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.2e-43 179.9 112 77.7
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 117 74.4
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 117 74.4
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.5e-43 179.5 115 76.5
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.0e-43 179.1 112 75.0
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.0e-43 179.1 112 75.9
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.0e-43 179.1 114 74.6
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.0e-43 179.1 119 73.1
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.0e-43 179.1 112 76.8
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 2.0e-43 179.1 112 75.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.6e-43 178.7 114 74.6
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.6e-43 178.7 112 75.9
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 2.6e-43 178.7 115 76.5
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 3.4e-43 178.3 114 74.6
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 3.4e-43 178.3 114 72.8
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 4.4e-43 177.9 115 72.2
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 4.4e-43 177.9 112 75.9
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 7.5e-43 177.2 110 74.5
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 7.5e-43 177.2 112 75.9
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 9.8e-43 176.8 113 76.1
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 9.8e-43 176.8 112 75.0
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 9.8e-43 176.8 113 75.2
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 9.8e-43 176.8 113 74.3
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 9.8e-43 176.8 112 75.0
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-42 176.4 112 75.0
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.3e-42 176.4 114 73.7
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.7e-42 176.0 110 73.6
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.7e-42 176.0 117 71.8
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.2e-42 175.6 115 73.9
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.2e-42 175.6 113 75.2
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 2.8e-42 175.3 112 72.3
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.8e-42 174.5 114 72.8
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.8e-42 174.5 114 73.7
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 6.3e-42 174.1 114 70.2
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 6.3e-42 174.1 112 72.3
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 8.3e-42 173.7 114 72.8
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.1e-41 173.3 114 71.1
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.8e-41 172.6 112 71.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.8e-41 172.6 112 72.3
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 73.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 5.4e-41 171.0 112 71.4
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 5.4e-41 171.0 112 70.5
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 5.4e-41 171.0 112 73.2
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 7.0e-41 170.6 112 72.3
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.2e-40 169.9 112 71.4
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.2e-40 169.9 114 71.1
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.6e-40 169.5 112 70.5
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.6e-40 169.5 112 69.6
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.6e-40 169.5 112 69.6
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.6e-40 169.5 112 69.6
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 1.6e-40 169.5 112 69.6
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 3.5e-40 168.3 110 72.7
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 5.9e-40 167.5 109 69.7
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 5.9e-40 167.5 110 71.8
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 7.7e-40 167.2 109 71.6
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 1.0e-39 166.8 114 71.9
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.7e-39 166.0 112 70.5
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 3.8e-39 164.9 138 60.9
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 5.0e-39 164.5 114 67.5
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 4.2e-38 161.4 114 64.9
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 9.5e-38 160.2 116 65.5
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.2e-37 159.8 127 62.2
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 8.0e-37 157.1 112 64.3
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 8.0e-37 157.1 112 64.3
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.3e-36 155.6 133 57.9
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 6.8e-36 154.1 115 63.5
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.5e-35 152.9 113 64.6
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 7.5e-35 150.6 96 71.9
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 7.5e-35 150.6 86 82.6
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.8e-35 150.2 115 62.6
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.3e-34 149.8 109 61.5
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.2e-34 149.1 93 69.9
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.4e-33 146.4 109 60.6
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.4e-33 145.6 110 62.7
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 7.0e-33 144.1 107 64.5
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.9e-31 138.7 84 76.2
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 6.6e-31 137.5 98 68.4
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.1e-30 136.7 86 72.1
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 7.3e-30 134.0 134 53.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.8e-29 132.1 111 59.5
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.4e-28 129.8 111 62.2
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 5.2e-28 127.9 107 60.7
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.2e-27 126.7 177 44.6
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 9.8e-27 123.6 74 77.0
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.3e-26 123.2 88 67.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.7e-26 122.9 106 54.7
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 7.8e-24 114.0 112 48.2
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 7.8e-24 114.0 68 82.4
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.9e-23 111.7 67 73.1
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 3.9e-23 111.7 76 69.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 3.9e-23 111.7 76 69.7
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.0e-23 111.3 76 65.8
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 1.2e-21 106.7 74 64.9
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.1e-20 103.6 68 73.5
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 2.0e-19 99.4 111 45.9
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.6e-19 99.0 95 46.3
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 9.8e-19 97.1 58 74.1
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.1e-17 93.6 84 57.1
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.2e-16 90.1 54 75.9
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 5.1e-15 84.7 55 70.9
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.1e-14 83.6 54 72.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.2e-11 73.6 51 68.6
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 3.4e-11 72.0 46 76.1
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 9.2e-09 63.9 60 51.7
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.3e-07 60.1 38 65.8
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.3e-06 55.5 81 34.6


User provided reference genes

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