Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 7.5e-105 384.4 283 100.0
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 2.4e-47 193.4 194 55.7
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.5e-44 184.1 194 53.6
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.8e-43 179.9 212 48.1
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 2.4e-42 176.8 209 51.2
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 2.6e-41 173.3 192 51.6
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 3.4e-41 172.9 201 48.8
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.4e-39 167.5 199 52.3
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.4e-39 166.8 197 50.3
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.4e-39 165.6 197 48.2
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 1.1e-36 157.9 206 47.6
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 3.7e-35 152.9 206 45.6
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.8e-33 145.6 198 45.5
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.3e-32 144.4 200 46.5
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.2e-32 143.7 200 46.5
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 2.2e-32 143.7 206 45.6
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 8.4e-32 141.7 198 44.4
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 8.4e-32 141.7 199 45.7
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 1.9e-31 140.6 208 43.8
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.9e-31 140.6 202 43.1
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.2e-31 139.8 198 44.4
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.2e-30 137.9 202 45.5
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.8e-29 134.0 196 41.3
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.8e-29 134.0 203 48.3
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.8e-29 134.0 206 41.3
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 5.1e-29 132.5 196 43.9
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 8.7e-29 131.7 211 45.5
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 4.3e-28 129.4 195 42.6
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 5.6e-28 129.0 200 46.0
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 5.6e-28 129.0 195 46.2
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 5.6e-28 129.0 196 43.4
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.6e-27 127.5 206 40.8
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.6e-27 127.5 192 41.1
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 2.1e-27 127.1 214 44.4
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 2.8e-27 126.7 205 44.4
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 3.7e-27 126.3 199 44.2
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 8.2e-27 125.2 206 40.8
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 4.0e-26 122.9 214 41.1
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.2e-25 121.3 201 41.3
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 1.2e-25 121.3 200 43.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 1.2e-25 121.3 214 41.6
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.4e-25 119.8 201 38.8
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 4.5e-25 119.4 188 38.3
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 5.8e-25 119.0 214 40.7
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 7.6e-25 118.6 198 40.4
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.0e-24 118.2 206 39.8
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.7e-24 117.5 204 42.2
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.4e-23 114.4 197 39.1
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 1.9e-23 114.0 212 43.9
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 2.5e-23 113.6 195 41.5
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.6e-22 110.9 199 39.7
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.1e-22 110.5 207 39.6
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 2.7e-22 110.2 193 38.9
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 6.0e-22 109.0 197 44.2
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 7.9e-22 108.6 195 38.5
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.3e-21 107.8 197 38.6
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.0e-21 106.7 216 41.2
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 5.1e-21 105.9 195 39.5
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 6.7e-21 105.5 220 39.5
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 6.7e-21 105.5 209 39.7
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 8.7e-21 105.1 208 39.4
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 3.3e-20 103.2 196 40.8
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 4.3e-20 102.8 205 41.5
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.3e-20 102.8 192 39.1
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 5.7e-20 102.4 195 39.0
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 5.7e-20 102.4 195 39.0
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 7.4e-20 102.1 193 40.9
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 9.7e-20 101.7 193 42.0
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.3e-19 101.3 174 39.1
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 8.2e-19 98.6 195 37.4
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 8.2e-19 98.6 198 38.9
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 1.1e-18 98.2 193 40.9
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.8e-18 97.4 192 39.1
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 2.4e-18 97.1 193 41.5
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 3.1e-18 96.7 193 39.4
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 3.1e-18 96.7 196 41.8
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 5.3e-18 95.9 205 41.5
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 6.9e-18 95.5 199 41.2
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.2e-17 94.7 200 35.5
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.2e-17 94.7 190 37.9
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 2.0e-17 94.0 190 37.4
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.6e-17 93.6 175 37.7
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 5.9e-17 92.4 192 38.0
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.0e-16 91.7 219 35.6
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.0e-16 91.7 203 41.9
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.3e-16 91.3 207 40.6
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.3e-16 91.3 210 36.7
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 2.2e-16 90.5 194 35.6
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.9e-16 90.1 190 36.8
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.0e-16 89.4 190 37.4
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 6.5e-16 89.0 197 35.0
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.9e-15 87.4 190 36.3
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 3.2e-15 86.7 196 40.3
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 3.2e-15 86.7 197 37.6
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 7.2e-15 85.5 192 33.9
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 9.4e-15 85.1 192 38.5
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 1.2e-14 84.7 202 40.1
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.2e-14 84.7 86 52.3
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 2.7e-14 83.6 195 35.4
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 7.9e-14 82.0 197 37.6
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 3.0e-13 80.1 193 37.8
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 6.7e-13 79.0 199 33.7
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 6.7e-13 79.0 194 37.1
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.5e-12 77.8 194 36.6
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 3.3e-12 76.6 195 38.5
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 2.8e-11 73.6 208 32.2
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 3.7e-11 73.2 192 31.8
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 2.6e-09 67.0 194 37.6
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 2.6e-09 67.0 195 29.2
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 5.9e-09 65.9 193 32.1
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 2.9e-08 63.5 156 33.3
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 3.8e-08 63.2 201 32.3
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 2.7e-06 57.0 193 31.1


User provided reference genes

Program Settings