Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.8e-60 235.7 119 100.0
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-19 100.1 49 93.9
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-19 100.1 48 97.9
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 8.5e-18 94.0 79 64.6
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.1e-17 93.6 78 65.4
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 4.6e-16 88.2 48 85.4
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.0e-15 87.0 48 83.3
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.0e-15 85.5 48 81.2
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.0e-15 85.5 48 81.2
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.0e-15 85.5 48 81.2
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 3.9e-15 85.1 86 55.8
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 3.9e-15 85.1 85 56.5
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.9e-15 85.1 47 80.9
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 3.9e-15 85.1 85 57.6
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 3.9e-15 85.1 85 54.1
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 3.9e-15 85.1 73 58.9
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 5.1e-15 84.7 47 83.0
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.5e-14 83.2 48 75.0
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.5e-14 83.2 47 80.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.5e-14 83.2 47 78.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.0e-14 82.8 48 79.2
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.0e-14 82.8 47 78.7
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 2.0e-14 82.8 47 78.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.0e-14 82.8 47 78.7
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.0e-14 82.8 47 78.7
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 2.5e-14 82.4 85 54.1
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.5e-14 82.4 47 78.7
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.5e-14 82.4 47 78.7
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 3.3e-14 82.0 48 77.1
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 3.3e-14 82.0 85 54.1
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 3.3e-14 82.0 48 75.0
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 4.3e-14 81.6 48 77.1
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 5.7e-14 81.3 47 74.5
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 5.7e-14 81.3 47 74.5
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 5.7e-14 81.3 47 74.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 5.7e-14 81.3 46 76.1
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 5.7e-14 81.3 48 77.1
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 5.7e-14 81.3 47 74.5
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.7e-14 81.3 47 76.6
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 7.4e-14 80.9 85 52.9
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 9.7e-14 80.5 47 78.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.3e-13 80.1 47 72.3
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.3e-13 80.1 46 76.1
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.3e-13 80.1 48 75.0
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.7e-13 79.7 47 72.3
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.7e-13 79.7 47 76.6
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.2e-13 79.3 85 51.8
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.2e-13 79.3 85 51.8
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.2e-13 79.3 85 51.8
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.8e-13 79.0 48 75.0
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.8e-13 79.0 48 75.0
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 3.7e-13 78.6 47 72.3
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.7e-13 78.6 85 51.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 3.7e-13 78.6 48 75.0
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 3.7e-13 78.6 47 76.6
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.7e-13 78.6 47 74.5
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.7e-13 78.6 85 51.8
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.7e-13 78.6 48 72.9
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.8e-13 78.2 85 50.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.8e-13 78.2 47 70.2
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 6.3e-13 77.8 48 72.9
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 6.3e-13 77.8 85 52.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 6.3e-13 77.8 47 70.2
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 8.2e-13 77.4 85 50.6
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 8.2e-13 77.4 47 68.1
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 8.2e-13 77.4 85 52.9
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.1e-12 77.0 47 72.3
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.4e-12 76.6 48 75.0
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.4e-12 76.6 47 70.2
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.4e-12 76.6 47 72.3
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.4e-12 76.6 47 70.2
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.4e-12 76.6 47 70.2
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.4e-12 76.6 47 72.3
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.8e-12 76.3 47 72.3
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.8e-12 76.3 48 72.9
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.4e-12 75.9 47 68.1
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.4e-12 75.9 47 72.3
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 2.4e-12 75.9 48 66.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.4e-12 75.9 47 70.2
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.4e-12 75.9 60 61.7
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 3.1e-12 75.5 48 68.8
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 3.1e-12 75.5 48 66.7
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.1e-12 75.5 48 70.8
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 3.1e-12 75.5 46 71.7
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.1e-12 75.5 48 64.6
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 4.1e-12 75.1 48 66.7
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.1e-12 75.1 47 72.3
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 5.3e-12 74.7 48 66.7
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.3e-12 74.7 48 68.8
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 6.9e-12 74.3 46 69.6
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.1e-12 73.9 85 49.4
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 9.1e-12 73.9 47 68.1
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 9.1e-12 73.9 48 68.8
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 9.1e-12 73.9 48 68.8
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.2e-11 73.6 76 53.9
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.2e-11 73.6 85 48.2
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.2e-11 73.6 48 68.8
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.2e-11 73.6 85 50.6
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.5e-11 73.2 85 49.4
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.5e-11 73.2 48 64.6
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.5e-11 73.2 47 70.2
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.0e-11 72.8 48 60.4
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 2.6e-11 72.4 48 60.4
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.6e-11 72.4 47 66.0
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 3.4e-11 72.0 47 66.0
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.4e-11 72.0 47 66.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.4e-11 72.0 47 63.8
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 3.4e-11 72.0 47 68.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 4.5e-11 71.6 48 58.3
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 4.5e-11 71.6 48 58.3
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 4.5e-11 71.6 48 58.3
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 4.5e-11 71.6 47 63.8
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.9e-11 71.2 85 50.6
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.0e-10 70.5 64 48.4
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.0e-10 70.5 48 60.4
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.0e-10 70.5 48 60.4
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.3e-10 70.1 48 58.3
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.7e-10 69.7 48 64.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.2e-10 69.3 47 61.7
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.2e-10 69.3 48 62.5
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.9e-10 68.9 64 51.6
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.9e-10 68.9 47 61.7
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 3.8e-10 68.6 47 66.0
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 5.0e-10 68.2 48 58.3
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 5.0e-10 68.2 48 58.3
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 5.0e-10 68.2 48 58.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.0e-10 68.2 48 56.2
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 5.0e-10 68.2 48 62.5
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 5.0e-10 68.2 48 60.4
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 8.5e-10 67.4 47 59.6
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 1.9e-09 66.2 48 56.2
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.2e-09 65.5 64 46.9
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.2e-09 65.5 47 55.3
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 3.2e-09 65.5 44 61.4
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 9.4e-09 63.9 47 55.3
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.6e-08 63.2 47 55.3
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 2.7e-08 62.4 47 57.4
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 5.1e-07 58.2 48 50.0
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 2.0e-06 56.2 48 50.0
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.0e-06 56.2 48 50.0
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.0e-06 56.2 47 48.9
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.0e-06 56.2 67 37.3
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 2.6e-06 55.8 48 45.8
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 5.7e-06 54.7 44 56.8


User provided reference genes

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