Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 6.7e-101 370.9 223 100.0
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.7e-75 286.6 228 74.1
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.1e-61 239.2 232 71.1
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.3e-56 223.0 232 69.8
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.5e-52 210.3 228 63.2
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.3e-51 207.2 219 53.4
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 2.2e-51 206.5 232 56.5
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.0e-48 197.6 231 53.7
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.3e-48 197.2 230 53.0
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-47 194.1 230 59.1
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.6e-46 189.1 229 58.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.6e-46 189.1 229 58.1
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.6e-46 189.1 236 49.6
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.6e-46 189.1 236 49.6
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.1e-45 186.0 234 50.9
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 6.8e-45 184.9 232 51.7
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 6.8e-45 184.9 232 51.7
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.6e-44 183.0 237 49.8
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 3.4e-44 182.6 229 49.8
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.4e-44 182.2 232 56.9
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.7e-43 180.3 232 47.4
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.9e-43 178.7 242 49.6
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.1e-42 177.6 250 48.8
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.1e-42 177.6 233 51.1
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.4e-42 177.2 227 46.7
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 4.1e-42 175.6 232 47.0
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 4.1e-42 175.6 237 48.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.4e-42 175.3 224 50.0
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 7.1e-42 174.9 233 48.9
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 9.2e-42 174.5 231 51.1
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.2e-41 174.1 231 52.4
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.6e-41 173.7 236 58.1
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.6e-41 173.7 247 47.4
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.7e-41 172.9 232 53.4
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.5e-41 172.6 236 48.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.8e-41 171.4 228 52.6
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 7.8e-41 171.4 237 48.1
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.0e-40 171.0 233 49.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.3e-40 170.6 237 48.1
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 6.6e-40 168.3 249 43.0
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 6.6e-40 168.3 238 50.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-39 167.2 229 47.2
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.5e-39 166.4 247 46.2
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 3.3e-39 166.0 229 57.2
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 3.3e-39 166.0 225 47.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.3e-39 166.0 244 45.9
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.6e-39 165.2 237 47.7
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.6e-39 165.2 247 45.3
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.3e-39 164.9 237 48.5
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.6e-38 163.7 251 44.2
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.1e-38 163.3 226 54.9
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.1e-38 163.3 228 47.4
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.8e-38 162.9 249 48.2
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.6e-38 162.5 226 47.8
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.8e-37 160.2 242 55.8
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 3.1e-37 159.5 233 47.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.0e-37 159.1 228 46.5
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 6.9e-37 158.3 241 44.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.2e-36 157.5 243 44.0
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-36 157.5 243 44.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.5e-36 157.1 233 51.5
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.0e-36 156.8 232 50.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.4e-36 156.0 243 42.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.4e-36 155.6 243 42.0
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 9.9e-36 154.5 246 42.7
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.7e-35 153.7 243 45.3
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 2.2e-35 153.3 243 44.9
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.2e-35 153.3 255 43.5
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.9e-35 152.9 229 42.4
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.8e-35 152.5 238 45.8
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 4.9e-35 152.1 242 49.6
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.9e-35 152.1 231 42.0
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.1e-34 151.0 238 38.2
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.4e-34 150.6 224 46.4
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.9e-34 150.2 223 44.8
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.4e-34 149.8 218 56.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 7.1e-34 148.3 248 44.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.6e-33 147.1 233 38.2
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.7e-32 143.7 235 45.5
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 3.9e-32 142.5 212 46.2
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 5.1e-32 142.1 230 42.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.5e-31 140.6 230 43.5
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.3e-31 139.0 224 45.5
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.6e-30 137.1 225 39.1
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.1e-30 136.7 265 45.7
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 3.6e-30 136.0 250 39.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.8e-30 135.6 248 40.3
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 8.1e-30 134.8 236 43.2
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.4e-29 134.0 220 41.4
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.1e-29 132.9 147 53.7
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 6.9e-29 131.7 235 42.6
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.2e-28 131.0 208 40.4
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.2e-28 131.0 227 40.5
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.3e-27 127.5 238 36.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.2e-27 126.7 237 42.2
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 8.4e-27 124.8 162 51.9
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.1e-26 124.4 216 39.8
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.9e-26 123.6 215 38.6
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.4e-26 123.2 222 41.9
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 9.3e-26 121.3 220 35.5
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 9.3e-26 121.3 239 38.5
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.6e-25 120.6 229 37.6
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.1e-25 120.2 233 40.8
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.5e-25 119.4 201 39.8
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.5e-25 119.4 201 39.8
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 4.6e-25 119.0 230 41.7
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 4.6e-25 119.0 231 40.7
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 7.9e-25 118.2 229 39.7
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.0e-24 117.9 237 40.9
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.0e-24 117.9 229 36.2
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-24 117.5 213 39.0
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 3.0e-24 116.3 230 41.7
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 3.0e-24 116.3 230 41.7
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 3.9e-24 115.9 212 38.7
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 8.7e-24 114.8 229 34.1
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.5e-23 114.0 223 36.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.5e-23 113.2 234 37.2
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.5e-23 113.2 234 37.2
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.3e-23 112.8 234 37.2
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 4.3e-23 112.5 229 40.2
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 4.3e-23 112.5 229 40.2
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 4.3e-23 112.5 229 40.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 9.6e-23 111.3 255 36.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 2.1e-22 110.2 253 39.9
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.4e-21 107.5 239 38.9
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.4e-21 106.7 219 35.6
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.1e-21 106.3 220 35.5
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 9.0e-21 104.8 254 43.3
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.4e-20 102.8 210 34.3
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.2e-19 100.1 149 40.9
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 4.9e-19 99.0 217 35.9
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.1e-17 93.6 234 34.2
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 4.6e-17 92.4 120 45.0
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.0e-16 91.3 103 48.5
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.0e-16 91.3 103 48.5
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.3e-16 90.1 198 41.4
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.0e-16 89.7 246 39.0
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 6.7e-16 88.6 204 38.2
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.3e-15 86.3 137 39.4
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 9.6e-15 84.7 158 37.3
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.3e-14 84.3 224 31.7
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 2.8e-14 83.2 150 40.7
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.4e-13 80.9 121 42.1
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 2.4e-13 80.1 190 34.2
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.4e-12 76.3 117 45.3
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.3e-11 74.3 94 47.9
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.1e-10 71.2 85 52.9
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.8e-08 63.9 166 30.7
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.9e-07 60.5 84 46.4
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 4.3e-07 59.3 142 32.4
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.3e-06 57.8 200 33.5


User provided reference genes

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