Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 3.0e-111 405.2 210 100.0
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 3.4e-78 295.4 213 77.0
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.7e-77 293.1 212 77.4
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 3.7e-77 292.0 212 75.9
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 7.1e-76 287.7 234 70.5
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.7e-75 285.8 208 75.5
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.0e-75 284.6 210 74.8
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 7.8e-75 284.3 207 76.8
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 7.8e-75 284.3 211 75.8
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.3e-74 283.5 215 78.1
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.3e-74 283.5 212 73.6
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.7e-74 283.1 211 74.9
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.3e-74 282.7 231 73.2
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.3e-74 282.7 210 74.8
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 7.3e-73 277.7 204 76.5
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 1.6e-72 276.6 210 74.8
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 6.2e-72 274.6 204 75.5
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 6.2e-72 274.6 213 72.8
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 8.1e-72 274.2 215 74.4
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.8e-71 273.1 211 73.9
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 2.0e-70 269.6 219 71.2
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 2.0e-70 269.6 219 70.8
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 2.6e-70 269.2 222 69.4
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 5.8e-70 268.1 207 72.0
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.7e-69 266.5 214 72.4
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 6.4e-69 264.6 211 73.0
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 2.4e-68 262.7 215 70.2
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 5.4e-68 261.5 218 69.7
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 9.2e-68 260.8 210 71.0
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 9.2e-68 260.8 212 69.8
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 2.1e-67 259.6 212 69.8
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 3.5e-67 258.8 221 68.8
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 6.0e-67 258.1 215 68.8
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.7e-66 256.5 244 63.9
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 6.6e-66 254.6 209 70.8
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 4.3e-65 251.9 218 66.1
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 9.6e-65 250.8 222 66.2
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.2e-64 250.4 234 63.7
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 1.6e-64 250.0 269 58.7
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 2.1e-64 249.6 231 66.2
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.8e-64 249.2 252 62.3
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 4.7e-64 248.4 215 65.1
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.1e-63 247.3 225 65.8
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.4e-63 246.9 223 67.7
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 5.2e-63 245.0 218 66.5
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 2.6e-62 242.7 211 67.3
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 5.8e-62 241.5 217 66.8
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 2.2e-61 239.6 222 65.3
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 5.4e-60 235.0 258 57.0
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 7.1e-60 234.6 224 64.7
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.2e-59 233.8 236 59.3
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 6.0e-59 231.5 207 66.2
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 3.0e-58 229.2 211 64.0
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.0e-58 229.2 210 64.8
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.6e-58 228.0 210 63.8
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.5e-57 226.9 208 63.5
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 5.6e-57 224.9 210 63.8
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 4.8e-56 221.9 217 61.3
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 9.0e-55 217.6 215 64.2
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.2e-54 217.2 210 60.0
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 7.6e-54 214.5 210 60.0
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.3e-53 213.8 220 60.0
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 2.1e-51 206.5 171 71.9
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 3.5e-51 205.7 211 59.7
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 6.0e-51 204.9 168 72.0
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.1e-49 200.7 179 67.6
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 1.1e-49 200.7 175 68.0
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.5e-49 199.5 219 57.5
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 4.3e-49 198.7 177 68.4
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 7.3e-49 198.0 210 60.0
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 6.2e-48 194.9 174 68.4
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 3.1e-47 192.6 183 64.5
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 2.0e-46 189.9 183 65.0
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.6e-46 189.5 171 65.5
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 6.4e-45 184.9 209 55.5
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.1e-44 184.1 92 98.9
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.4e-44 183.7 92 97.8
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.4e-44 183.0 92 97.8
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.2e-44 182.2 97 93.8
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 5.4e-44 181.8 92 97.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 5.4e-44 181.8 114 81.6
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 7.1e-44 181.4 92 96.7
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.5e-43 179.1 167 63.5
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 4.6e-43 178.7 92 96.7
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.8e-42 176.8 218 51.8
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.3e-42 176.4 167 64.7
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 3.0e-42 176.0 92 95.7
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 3.9e-42 175.6 93 95.7
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 3.9e-42 175.6 266 47.4
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 8.7e-42 174.5 92 94.6
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.9e-41 173.3 272 45.6
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 1.4e-39 167.2 168 58.9
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 2.6e-38 162.9 92 89.1
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 2.6e-38 162.9 92 89.1
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 4.5e-38 162.2 95 93.7
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.9e-37 159.5 230 48.3
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 6.5e-37 158.3 242 47.9
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 2.5e-36 156.4 211 48.8
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 1.2e-35 154.1 182 57.1
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 2.7e-35 152.9 132 62.1
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.3e-32 144.1 319 38.2
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.3e-32 144.1 207 48.8
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 1.1e-31 141.0 296 40.9
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 2.6e-30 136.3 144 59.7
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 5.5e-28 128.6 217 43.8
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 9.3e-28 127.9 100 72.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.2e-27 127.5 107 69.2
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.5e-25 120.6 175 48.6
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 1.9e-25 120.2 63 92.1
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 6.9e-23 111.7 157 49.0
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 5.9e-22 108.6 281 36.7
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.9e-22 108.6 176 42.6
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 7.7e-22 108.2 158 48.7
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.7e-21 107.1 212 39.2
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-20 104.4 123 56.1
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 4.6e-19 99.0 52 94.2
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 6.3e-16 88.6 115 50.4
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-15 87.4 167 41.9
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 1.4e-15 87.4 167 41.9
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.8e-15 87.0 131 47.3
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 3.1e-15 86.3 40 100.0
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 1.5e-14 84.0 116 50.0
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 2.0e-14 83.6 117 54.7
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 1.0e-13 81.3 53 81.1
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.1e-12 77.8 169 36.7
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.0e-10 71.2 41 85.4
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 9.7e-09 64.7 40 77.5
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 9.7e-09 64.7 42 81.0
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.2e-08 63.5 91 45.1
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.4e-07 60.8 35 88.6
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 2.4e-07 60.1 123 37.4


User provided reference genes

Program Settings