Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 4.4e-55 217.6 104 100.0
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 7.4e-26 120.6 103 61.2
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.3e-25 119.8 108 54.6
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.8e-24 115.9 105 56.2
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 2.4e-24 115.5 116 51.7
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.1e-24 115.2 105 54.3
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.5e-23 112.8 102 55.9
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 3.4e-23 111.7 114 52.6
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 4.5e-23 111.3 114 52.6
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.0e-22 110.2 108 53.7
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.7e-22 109.4 109 55.0
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 2.9e-22 108.6 106 54.7
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 1.2e-20 103.2 110 50.0
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.3e-19 99.8 111 48.6
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 3.0e-19 98.6 104 53.8
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 3.9e-19 98.2 115 47.8
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.3e-17 93.2 101 52.5
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.3e-17 93.2 101 50.5
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 2.2e-17 92.4 104 51.0
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 2.2e-17 92.4 105 51.4
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 2.8e-17 92.0 104 50.0
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 6.3e-17 90.9 110 46.4
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.1e-16 90.1 108 47.2
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 4.1e-16 88.2 108 43.5
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 4.1e-16 88.2 107 49.5
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 9.0e-16 87.0 108 47.2
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 1.2e-15 86.7 115 46.1
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.0e-15 85.9 118 44.9
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.0e-15 85.9 111 47.7
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.4e-15 85.1 106 40.6
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 4.5e-15 84.7 113 44.2
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.5e-15 84.7 118 44.9
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 5.9e-15 84.3 106 48.1
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.0e-14 83.6 118 44.9
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 1.3e-14 83.2 88 46.6
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.7e-14 82.8 114 44.7
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.9e-14 82.0 111 45.0
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.9e-14 82.0 111 45.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 2.9e-14 82.0 104 48.1
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 3.8e-14 81.6 103 46.6
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.8e-14 81.6 111 42.3
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 3.8e-14 81.6 102 48.0
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 6.5e-14 80.9 105 40.0
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 1.1e-13 80.1 123 41.5
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.4e-13 79.7 74 54.1
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.4e-13 79.7 74 54.1
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.9e-13 79.3 74 54.1
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 3.2e-13 78.6 104 47.1
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 9.4e-13 77.0 102 41.2
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 1.6e-12 76.3 119 42.0
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 2.7e-12 75.5 103 43.7
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 3.6e-12 75.1 106 44.3
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 3.6e-12 75.1 105 43.8
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 3.6e-12 75.1 103 43.7
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 4.6e-12 74.7 102 40.2
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 4.6e-12 74.7 99 45.5
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 7.9e-12 73.9 102 41.2
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 7.9e-12 73.9 116 41.4
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.0e-11 73.6 102 40.2
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.0e-11 73.6 111 39.6
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.0e-11 73.6 124 38.7
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 1.4e-11 73.2 122 36.9
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.4e-11 73.2 81 46.9
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 1.8e-11 72.8 104 43.3
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 2.3e-11 72.4 106 44.3
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 2.3e-11 72.4 105 45.7
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 3.0e-11 72.0 114 39.5
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 3.9e-11 71.6 119 37.0
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 3.9e-11 71.6 106 46.2
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 3.9e-11 71.6 106 43.4
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 3.9e-11 71.6 102 42.2
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 5.1e-11 71.2 102 41.2
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 5.1e-11 71.2 102 41.2
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 5.1e-11 71.2 101 39.6
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 5.1e-11 71.2 102 41.2
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 5.1e-11 71.2 109 40.4
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 6.7e-11 70.9 105 39.0
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 6.7e-11 70.9 102 41.2
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 6.7e-11 70.9 107 42.1
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 6.7e-11 70.9 109 40.4
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 8.8e-11 70.5 104 41.3
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 1.1e-10 70.1 119 37.8
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.1e-10 70.1 107 44.9
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.1e-10 70.1 104 41.3
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 1.1e-10 70.1 102 46.1
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 1.1e-10 70.1 120 39.2
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 1.5e-10 69.7 102 41.2
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 1.5e-10 69.7 102 41.2
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 2.0e-10 69.3 109 38.5
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 2.5e-10 68.9 106 44.3
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 2.5e-10 68.9 104 40.4
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 2.5e-10 68.9 103 43.7
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 3.3e-10 68.6 120 35.0
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 4.3e-10 68.2 102 37.3
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 4.3e-10 68.2 121 37.2
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 4.3e-10 68.2 121 37.2
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 4.3e-10 68.2 121 37.2
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 5.7e-10 67.8 125 34.4
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 5.7e-10 67.8 102 39.2
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 5.7e-10 67.8 125 34.4
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 7.4e-10 67.4 111 37.8
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 7.4e-10 67.4 111 37.8
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 9.7e-10 67.0 113 38.9
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 1.3e-09 66.6 112 37.5
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.7e-09 66.2 102 36.3
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.7e-09 66.2 102 36.3
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 2.2e-09 65.9 102 36.3
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 2.2e-09 65.9 102 36.3
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 2.2e-09 65.9 102 36.3
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 2.2e-09 65.9 121 35.5
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.8e-09 65.5 112 42.9
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.8e-09 65.5 110 38.2
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 2.8e-09 65.5 102 41.2
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 3.7e-09 65.1 101 44.6
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 6.3e-09 64.3 104 40.4
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.1e-08 63.5 110 36.4
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.1e-08 63.5 110 36.4
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 1.4e-08 63.2 129 31.8
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.4e-08 63.2 107 40.2
Gohir.A08G156500 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.8e-08 62.8 110 39.1
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 2.4e-08 62.4 112 37.5
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 3.1e-08 62.0 111 38.7
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 3.1e-08 62.0 111 38.7
Gohir.D08G177000 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.1e-08 61.6 110 38.2
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 6.9e-08 60.8 113 37.2
Gorai.004G184900 Gossypium raimondii HOM05D006292 ORTHO05D006110 6.9e-08 60.8 110 38.2
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 1.2e-07 60.1 113 39.8
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 1.2e-07 60.1 115 33.0
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 3.4e-07 58.5 103 36.9
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 5.9e-07 57.8 103 38.8
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 5.9e-07 57.8 103 38.8
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 1.0e-06 57.0 70 41.4
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 1.0e-06 57.0 52 51.9
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 1.3e-06 56.6 102 34.3
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.7e-06 56.2 120 38.3
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 8.5e-06 53.9 111 37.8


User provided reference genes

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