Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G180448 Manihot esculenta HOM05D003623 ORTHO05D004335 2.1e-15 84.3 37 100.0
Thhalv10019996m.g Eutrema salsugineum HOM05D003623 ORTHO05D004335 8.8e-14 79.0 36 94.4
Manes.08G142800 Manihot esculenta HOM05D003623 ORTHO05D004335 8.8e-14 79.0 36 94.4
Manes.08G146600 Manihot esculenta HOM05D003623 ORTHO05D004335 8.8e-14 79.0 36 94.4
Manes.09G145400 Manihot esculenta HOM05D003623 ORTHO05D004335 8.8e-14 79.0 36 94.4
TWI60G1592 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 1.1e-13 78.6 36 91.7
ATR0561G246 Amborella trichopoda HOM05D003623 ORTHO05D004335 1.5e-13 78.2 36 91.7
Sc16g0010040 Simmondsia chinensis HOM05D003623 ORTHO05D004335 2.0e-13 77.8 36 91.7
TAR633G0333 Trochodendron aralioides HOM05D003623 ORTHO05D004335 2.0e-13 77.8 36 91.7
arahy.Tifrunner.gnm1.ann1.LG1RTX Arachis hypogaea HOM05D003623 ORTHO05D004335 2.5e-13 77.4 36 91.7
arahy.Tifrunner.gnm1.ann1.XW6TTL Arachis hypogaea HOM05D003623 ORTHO05D004335 2.5e-13 77.4 36 91.7
Medtr1g079510 Medicago truncatula HOM05D003623 ORTHO05D004335 2.5e-13 77.4 36 91.7
TPR.G31601 Trifolium pratense HOM05D003623 ORTHO05D004335 2.5e-13 77.4 36 91.7
BolC1t05759H Brassica oleracea HOM05D003623 ORTHO05D004335 3.3e-13 77.0 36 91.7
CARHR078390 Cardamine hirsuta HOM05D003623 ORTHO05D004335 3.3e-13 77.0 36 91.7
CiPaw.01G112500 Carya illinoinensis HOM05D003623 ORTHO05D004335 3.3e-13 77.0 36 91.7
Sp3g03150 Schrenkiella parvula HOM05D003623 ORTHO05D004335 3.3e-13 77.0 36 91.7
TWI34G1660 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 3.3e-13 77.0 36 91.7
TWI34G1961 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 3.3e-13 77.0 36 91.7
MD04G1235300 Malus domestica HOM05D003623 ORTHO05D004335 4.3e-13 76.6 36 88.9
MD12G1253100 Malus domestica HOM05D003623 ORTHO05D004335 4.3e-13 76.6 36 88.9
GSVIVG01026359001 Vitis vinifera HOM05D003623 ORTHO05D004335 4.3e-13 76.6 36 91.7
CSS0034552 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
Duzib151G0791 Durio zibethinus HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
Gohir.A10G130700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
Gohir.D10G135700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
Rhsim04G0132100 Rhododendron simsii HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
THA.LOC104820750 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
Thecc.04G190700 Theobroma cacao HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
vmacro00425 Vaccinium macrocarpon HOM05D003623 ORTHO05D004335 5.7e-13 76.3 36 91.7
Aa31LG2G2050 Aethionema arabicum HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
Aqoxy2G03998 Aquilegia oxysepala HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
A01p40930 Brassica napus HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
BNapus_Darmor_BZH_scaffold_78p00780 Brassica napus HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
BraA01t04529Z Brassica rapa HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
Ca_09980_v3 Cicer arietinum L. HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
Ciclev10018711m.g Citrus clementina HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
FvH4_6g01310 Fragaria vesca HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
FAN02G2773 Fragaria x ananassa HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
FAN05G1824 Fragaria x ananassa HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
FAN05G2056 Fragaria x ananassa HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
FAN09G2957 Fragaria x ananassa HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
Gohir.A11G243000 Gossypium hirsutum HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
Gohir.A13G162400 Gossypium hirsutum HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
Gohir.D11G252600 Gossypium hirsutum HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
Gohir.D13G171700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
Gorai.013G189100 Gossypium raimondii HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
HanXRQChr14g0436771 Helianthus annuus HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
Lsat_1_v5_gn_2_49120 Lactuca sativa HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
Nn1g08118 Nelumbo nucifera HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 91.7
RcHm_v2.0_Chr3g0448861 Rosa chinensis HOM05D003623 ORTHO05D004335 7.4e-13 75.9 36 88.9
Lj5g0011380 Lotus japonicus HOM05D003623 ORTHO05D004335 9.7e-13 75.5 35 91.4
Thecc.05G264600 Theobroma cacao HOM05D003623 ORTHO05D004335 9.7e-13 75.5 36 88.9
EL10Ac4g09791 Beta vulgaris HOM05D003623 ORTHO05D004335 1.3e-12 75.1 36 88.9
CSS0050373 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 1.3e-12 75.1 36 88.9
Psat6g140680 Pisum sativum HOM05D003623 ORTHO05D004335 1.3e-12 75.1 36 88.9
THA.LOC104821603 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 1.3e-12 75.1 36 88.9
Cpa.g.sc51.46 Carica papaya HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 88.9
Duzib128G0757 Durio zibethinus HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 88.9
Potri.013G051400 Populus trichocarpa HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 88.9
Potri.019G025600 Populus trichocarpa HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 88.9
Sabra13G0046700 Salix brachista HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 88.9
Sabra19G0035000 Salix brachista HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 88.9
Sabra19G0038000 Salix brachista HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 88.9
TAR362G0319 Trochodendron aralioides HOM05D003623 ORTHO05D004335 1.7e-12 74.7 36 86.1
Actinidia20848 Actinidia chinensis HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
MSTRG.9774 Avicennia marina HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
CDE05G0087 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
CDE05G1163 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
Dinv10856 Davidia involucrata HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
Dinv32173 Davidia involucrata HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
Glyma.10G168700 Glycine max HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
Hma1.2p1_0984F.1_g244260 Hydrangea macrophylla HOM05D003623 ORTHO05D004335 2.2e-12 74.3 35 91.4
Nitab4.5_0002260g0250 Nicotiana tabacum HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
Nitab4.5_0003358g0040 Nicotiana tabacum HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
PSO675G4779 Papaver somniferum HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
Peaxi162Scf00423g00724 Petunia axillaris HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
Solyc05g053835.2 Solanum lycopersicum HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
PGSC0003DMG400015752 Solanum tuberosum HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
VMungo0720G0796 Vigna mungo HOM05D003623 ORTHO05D004335 2.2e-12 74.3 36 88.9
MSTRG.4272 Avicennia marina HOM05D003623 ORTHO05D004335 2.8e-12 73.9 36 88.9
COL.COLO4_38177 Corchorus olitorius HOM05D003623 ORTHO05D004335 2.8e-12 73.9 36 88.9
Glyma.20G221000 Glycine max HOM05D003623 ORTHO05D004335 2.8e-12 73.9 36 88.9
MBI07_g12178_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D004335 2.8e-12 73.9 35 91.4
Sc13g0000570 Simmondsia chinensis HOM05D003623 ORTHO05D004335 2.8e-12 73.9 36 88.9
SGA_v2.0_scaffold102G29911 Striga asiatica HOM05D003623 ORTHO05D004335 2.8e-12 73.9 36 88.9
Atru.chr2.1140 Acer truncatum HOM05D003623 ORTHO05D004335 3.7e-12 73.6 36 83.3
Actinidia35820 Actinidia chinensis HOM05D003623 ORTHO05D004335 3.7e-12 73.6 36 86.1
AL3G14190 Arabidopsis lyrata HOM05D003623 ORTHO05D004335 3.7e-12 73.6 36 88.9
AT3G04240 Arabidopsis thaliana HOM05D003623 ORTHO05D004335 3.7e-12 73.6 36 88.9
Carub.0003s0346 Capsella rubella HOM05D003623 ORTHO05D004335 3.7e-12 73.6 36 88.9
AUR62006999 Chenopodium quinoa HOM05D003623 ORTHO05D004335 3.7e-12 73.6 36 86.1
QL03p033428 Quercus lobata HOM05D003623 ORTHO05D004335 3.7e-12 73.6 35 88.6
QL06p027597 Quercus lobata HOM05D003623 ORTHO05D004335 3.7e-12 73.6 36 86.1
Cfa008669 Carpinus fangiana HOM05D003623 ORTHO05D004335 4.8e-12 73.2 36 86.1
Haze_11688 Corylus avellana HOM05D003623 ORTHO05D004335 4.8e-12 73.2 36 86.1
Phvul.L002532 Phaseolus vulgaris HOM05D003623 ORTHO05D004335 4.8e-12 73.2 36 86.1
Prupe.6G355200 Prunus persica HOM05D003623 ORTHO05D004335 4.8e-12 73.2 36 83.3
Sopen05g032310 Solanum pennellii HOM05D003623 ORTHO05D004335 4.8e-12 73.2 36 86.1
ECA238G2410 Erigeron canadensis HOM05D003623 ORTHO05D004335 6.3e-12 72.8 36 88.9
Nn8g41257 Nelumbo nucifera HOM05D003623 ORTHO05D004335 6.3e-12 72.8 36 88.9
Ah.13g077780 Amaranthus hybridus HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 83.3
arahy.Tifrunner.gnm1.ann1.97NMUU Arachis hypogaea HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 83.3
CAN.G1310.13 Capsicum annuum HOM05D003623 ORTHO05D004335 8.2e-12 72.4 35 88.6
ClCG03G011450 Citrullus lanatus HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 86.1
Cc03_g09530 Coffea canephora HOM05D003623 ORTHO05D004335 8.2e-12 72.4 35 88.6
MELO3C010102.2 Cucumis melo HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 86.1
CsaV3_1G045020 Cucumis sativus L. HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 86.1
Duzib268G0561 Durio zibethinus HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 86.1
Gorai.011G150500 Gossypium raimondii HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 88.9
Sed0012930 Sechium edule HOM05D003623 ORTHO05D004335 8.2e-12 72.4 36 86.1
AUR62018537 Chenopodium quinoa HOM05D003623 ORTHO05D004335 1.1e-11 72.0 36 86.1
AUR62020880 Chenopodium quinoa HOM05D003623 ORTHO05D004335 1.1e-11 72.0 36 86.1
Migut.G00821 Erythranthe guttata HOM05D003623 ORTHO05D004335 1.1e-11 72.0 35 85.7
Migut.G01152 Erythranthe guttata HOM05D003623 ORTHO05D004335 1.1e-11 72.0 35 85.7
HanXRQChr01g0021981 Helianthus annuus HOM05D003623 ORTHO05D004335 1.1e-11 72.0 36 83.3
Peaxi162Scf00286g00829 Petunia axillaris HOM05D003623 ORTHO05D004335 1.4e-11 71.6 35 85.7
COL.COLO4_35966 Corchorus olitorius HOM05D003623 ORTHO05D004335 1.8e-11 71.2 35 85.7
Lalb_Chr21g0311321 Lupinus albus HOM05D003623 ORTHO05D004335 1.8e-11 71.2 36 83.3
PSO017G5742 Papaver somniferum HOM05D003623 ORTHO05D004335 1.8e-11 71.2 36 86.1
SalBow2G2507 Salvia bowleyana HOM05D003623 ORTHO05D004335 1.8e-11 71.2 36 80.6
Hund07163 Selenicereus undatus HOM05D003623 ORTHO05D004335 1.8e-11 71.2 36 83.3
SEGI_12158 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 1.8e-11 71.2 36 86.1
Zm00001eb241190 Zea mays HOM05D003623 ORTHO05D004335 1.8e-11 71.2 36 83.3
EL10Ac3g07439 Beta vulgaris HOM05D003623 ORTHO05D004335 2.4e-11 70.9 36 83.3
unitig_37.g12000 Utricularia gibba HOM05D003623 ORTHO05D004335 2.4e-11 70.9 36 86.1
Pp3c5_10370 Physcomitrium patens HOM05D003623 ORTHO05D004335 3.1e-11 70.5 36 83.3
arahy.Tifrunner.gnm1.ann1.3CZ4H2 Arachis hypogaea HOM05D003623 ORTHO05D004335 4.1e-11 70.1 36 80.6
CANSAT54G1818 Cannabis sativa HOM05D003623 ORTHO05D004335 4.1e-11 70.1 36 83.3
Duzib177G0921 Durio zibethinus HOM05D003623 ORTHO05D004335 4.1e-11 70.1 36 83.3
Oeu002933.1 Olea europaea HOM05D003623 ORTHO05D004335 4.1e-11 70.1 36 80.6
HPP92_006960 Vanilla planifolia HOM05D003623 ORTHO05D004335 4.1e-11 70.1 36 80.6
AagrBONN_evm.TU.Sc2ySwM_117.2298 Anthoceros agrestis HOM05D003623 ORTHO05D004335 5.3e-11 69.7 36 80.6
Nitab4.5_0000309g0320 Nicotiana tabacum HOM05D003623 ORTHO05D004335 5.3e-11 69.7 36 80.6
Solyc09g097830.4 Solanum lycopersicum HOM05D003623 ORTHO05D004335 5.3e-11 69.7 36 80.6
Sopen09g035770 Solanum pennellii HOM05D003623 ORTHO05D004335 5.3e-11 69.7 36 80.6
HPP92_000441 Vanilla planifolia HOM05D003623 ORTHO05D004335 5.3e-11 69.7 35 82.9
Pp3c6_13940 Physcomitrium patens HOM05D003623 ORTHO05D004335 6.9e-11 69.3 36 77.8
CANSAT78G1699 Cannabis sativa HOM05D003623 ORTHO05D004335 9.1e-11 68.9 35 85.7
Eucgr.L00641 Eucalyptus grandis HOM05D003623 ORTHO05D004335 1.2e-10 68.6 36 80.6
Mapoly0034s0037 Marchantia polymorpha HOM05D003623 ORTHO05D004335 1.2e-10 68.6 36 80.6
Hund19026 Selenicereus undatus HOM05D003623 ORTHO05D004335 1.2e-10 68.6 36 77.8
CAN.G2073.3 Capsicum annuum HOM05D003623 ORTHO05D004335 2.0e-10 67.8 36 77.8
DCAR_026670 Daucus carota HOM05D003623 ORTHO05D004335 2.0e-10 67.8 36 80.6
Zm00001eb179230 Zea mays HOM05D003623 ORTHO05D004335 2.6e-10 67.4 36 77.8
Aa31LG5G14720 Aethionema arabicum HOM05D003623 ORTHO05D004335 3.4e-10 67.0 52 63.5
Lj6A347G37 Lonicera japonica HOM05D003623 ORTHO05D004335 4.5e-10 66.6 36 80.6
Os01g0915400 Oryza sativa ssp. japonica HOM05D003623 ORTHO05D004335 4.5e-10 66.6 36 72.2
SEGI_29220 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 5.9e-10 66.2 36 75.0
SMO347G0623 Selaginella moellendorffii HOM05D003623 ORTHO05D004335 7.7e-10 65.9 36 77.8
Zm00001eb083020 Zea mays HOM05D003623 ORTHO05D004335 1.0e-09 65.5 36 77.8
PRCOL_00000371 Prasinoderma coloniale HOM05D003623 ORTHO05D004335 5.0e-09 63.2 36 72.2
CAN.G2073.2 Capsicum annuum HOM05D003623 ORTHO05D004335 1.4e-08 61.6 36 77.8
Glyma.09G108700 Glycine max HOM05D003623 ORTHO05D004335 1.4e-08 61.6 30 86.7
CBR_g46307 Chara braunii HOM05D003623 ORTHO05D004335 3.2e-08 60.5 36 66.7


User provided reference genes

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