Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G180436 Manihot esculenta HOM05D009290 ORTHO05D009597 2.1e-143 512.3 254 100.0
Manes.08G028050 Manihot esculenta HOM05D009290 ORTHO05D009597 5.0e-68 261.9 238 62.2
Manes.06G115750 Manihot esculenta HOM05D009290 ORTHO05D009597 8.3e-63 244.6 297 49.8
Manes.12G086248 Manihot esculenta HOM05D009290 ORTHO05D009597 8.3e-63 244.6 297 49.8
Manes.16G080850 Manihot esculenta HOM05D009290 ORTHO05D009597 7.5e-56 221.5 119 88.2
Manes.07G063157 Manihot esculenta HOM05D009290 ORTHO05D009597 8.3e-47 191.4 269 45.4
Manes.18G114301 Manihot esculenta HOM05D009290 ORTHO05D009597 5.4e-46 188.7 286 44.1
Manes.08G084511 Manihot esculenta HOM05D009290 ORTHO05D009597 2.3e-41 173.3 112 76.8
Manes.11G040473 Manihot esculenta HOM05D009290 ORTHO05D009597 4.0e-41 172.6 99 83.8
Manes.06G160267 Manihot esculenta HOM05D009290 ORTHO05D009597 2.4e-38 163.3 112 72.3
Nitab4.5_0005770g0030 Nicotiana tabacum HOM05D009290 ORTHO05D009597 8.6e-36 154.8 112 58.0
Nitab4.5_0022706g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 8.1e-34 148.3 133 51.1
Nitab4.5_0002907g0070 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.5e-27 127.5 112 53.6
Nitab4.5_0007164g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 2.2e-23 113.6 137 44.5
AUR62041429 Chenopodium quinoa HOM05D000107 ORTHO05D000062 8.4e-23 111.7 103 47.6
EL10Ac4g08902 Beta vulgaris HOM05D008455 ORTHO05D009597 3.0e-20 103.2 117 41.9
EL10Ac2g03816 Beta vulgaris HOM05D008455 ORTHO05D009597 8.7e-20 101.7 104 43.3
Nitab4.5_0014285g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.5e-19 100.9 77 57.1
EL10Ac2g03097 Beta vulgaris HOM05D008455 ORTHO05D009597 5.6e-19 99.0 194 32.5
EL10Ac9g22691 Beta vulgaris HOM05D008455 ORTHO05D009597 9.6e-19 98.2 155 34.8
EL10Ac3g06257 Beta vulgaris HOM05D008455 ORTHO05D009597 1.3e-18 97.8 104 42.3
EL10Ac3g06519 Beta vulgaris HOM05D008455 ORTHO05D009597 6.2e-18 95.5 104 39.4
AUR62031247 Chenopodium quinoa HOM05D008455 ORTHO05D009597 6.2e-18 95.5 128 42.2
EL10Ac2g03454 Beta vulgaris HOM05D008455 ORTHO05D009597 1.8e-17 94.0 96 41.7
AUR62039309 Chenopodium quinoa HOM05D008455 ORTHO05D009597 3.1e-17 93.2 99 42.4
Nitab4.5_0010535g0040 Nicotiana tabacum HOM05D009290 ORTHO05D009597 3.1e-17 93.2 137 40.9
Ah.06g194520 Amaranthus hybridus HOM05D000711 ORTHO05D000545 5.3e-17 92.4 109 41.3
AUR62037959 Chenopodium quinoa HOM05D000107 ORTHO05D009597 9.9e-16 88.2 139 34.5
Manes.07G073322 Manihot esculenta HOM05D009290 ORTHO05D009597 1.7e-15 87.4 50 90.0
Hund08561 Selenicereus undatus HOM05D008455 ORTHO05D009597 3.8e-15 86.3 129 36.4
Hund15433 Selenicereus undatus HOM05D008455 ORTHO05D009597 3.8e-15 86.3 104 38.5
Manes.10G059450 Manihot esculenta HOM05D009290 ORTHO05D009597 4.9e-15 85.9 50 90.0
Manes.17G119355 Manihot esculenta HOM05D009290 ORTHO05D009597 4.9e-15 85.9 50 88.0
Manes.11G040457 Manihot esculenta HOM05D009290 ORTHO05D009597 8.4e-15 85.1 50 88.0
EL10Ac3g06529 Beta vulgaris HOM05D008455 ORTHO05D009597 1.9e-14 84.0 82 42.7
Solyc04g005730.3 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.9e-14 84.0 103 35.9
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 2.4e-14 83.6 58 58.6
AUR62037945 Chenopodium quinoa HOM05D008455 ORTHO05D009597 4.2e-14 82.8 99 40.4
AUR62032009 Chenopodium quinoa HOM05D008455 ORTHO05D009597 5.4e-14 82.4 112 41.1
PGSC0003DMG400046763 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.1e-13 80.5 103 35.9
AUR62025805 Chenopodium quinoa HOM05D003888 ORTHO05D007163 6.0e-13 79.0 140 31.4
AUR62037081 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.3e-12 77.8 139 33.8
Manes.08G081411 Manihot esculenta HOM05D009290 ORTHO05D009597 2.3e-12 77.0 45 88.9
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 3.9e-12 76.3 115 31.3
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 8.7e-12 75.1 86 36.0
Nitab4.5_0001261g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.9e-11 73.9 58 51.7
EL10Ac9g20800 Beta vulgaris HOM05D003888 ORTHO05D007163 2.5e-11 73.6 102 31.4
PGSC0003DMG400038965 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.5e-11 73.6 122 35.2
EL10Ac5g11837 Beta vulgaris HOM05D000107 ORTHO05D000062 1.3e-10 71.2 116 29.3
EL10Ac2g03313 Beta vulgaris HOM05D000107 ORTHO05D000062 1.6e-10 70.9 132 28.8
EL10Ac4g09043 Beta vulgaris HOM05D003888 ORTHO05D007163 1.6e-10 70.9 102 31.4
EL10Ac5g11043 Beta vulgaris HOM05D000107 ORTHO05D007163 1.6e-10 70.9 102 31.4
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.6e-10 69.7 96 37.5
EL10Ac9g20905 Beta vulgaris HOM05D003888 ORTHO05D007163 4.8e-10 69.3 102 30.4
AUR62039826 Chenopodium quinoa HOM05D008455 ORTHO05D009597 6.2e-10 68.9 94 39.4
Hund00844 Selenicereus undatus HOM05D008455 ORTHO05D009597 1.4e-09 67.8 129 32.6
EL10Ac8g19343 Beta vulgaris HOM05D000107 ORTHO05D007163 1.8e-09 67.4 102 30.4
Nn1g00481 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.8e-09 67.4 85 36.5
Nitab4.5_0001078g0120 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.8e-09 67.4 68 47.1
MBI05_g40697_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-09 66.2 87 34.5
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-09 66.2 87 33.3
HanXRQChr03g0071511 Helianthus annuus HOM05D008488 ORTHO05D020588 5.3e-09 65.9 140 28.6
HanXRQChr03g0084621 Helianthus annuus HOM05D008488 ORTHO05D000385 5.3e-09 65.9 140 29.3
EL10Ac6g14473 Beta vulgaris HOM05D008595 ORTHO05D010945 1.2e-08 64.7 130 28.5
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-08 64.7 83 34.9
Nn3g21442 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.2e-08 64.7 98 31.6
MBI19_g00149_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-08 64.3 84 34.5
CAN.G215.7 Capsicum annuum HOM05D009290 ORTHO05D013052 3.4e-08 63.2 95 41.1
AUR62022285 Chenopodium quinoa HOM05D003888 ORTHO05D007163 4.5e-08 62.8 120 30.0
Solyc10g017750.2 Solanum lycopersicum HOM05D003888 ORTHO05D007163 4.5e-08 62.8 80 33.8
EL10Ac7g17511 Beta vulgaris HOM05D000107 ORTHO05D000062 5.8e-08 62.4 77 35.1
Lj1g0024910 Lotus japonicus HOM05D004615 ORTHO05D007166 5.8e-08 62.4 127 29.9
EL10Ac4g09128 Beta vulgaris HOM05D000107 ORTHO05D000062 7.6e-08 62.0 75 36.0
EL10Ac7g16364 Beta vulgaris HOM05D000107 ORTHO05D000062 7.6e-08 62.0 75 36.0
EL10Ac9g20933 Beta vulgaris HOM05D000107 ORTHO05D007163 7.6e-08 62.0 75 36.0
Phvul.L001738 Phaseolus vulgaris HOM05D008859 ORTHO05D007166 7.6e-08 62.0 151 31.8
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 7.6e-08 62.0 116 31.0
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 7.6e-08 62.0 115 31.3
EL10Ac1g01767 Beta vulgaris HOM05D003888 ORTHO05D007163 1.3e-07 61.2 75 34.7
EL10Ac4g09268 Beta vulgaris HOM05D000107 ORTHO05D000062 1.3e-07 61.2 75 36.0
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.3e-07 61.2 157 31.2
EL10Ac4g08946 Beta vulgaris HOM05D000107 ORTHO05D007163 1.7e-07 60.8 75 34.7
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 1.7e-07 60.8 112 33.9
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 1.7e-07 60.8 110 33.6
TAR374G1143 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-07 60.8 85 32.9
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 2.2e-07 60.5 183 26.8
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.2e-07 60.5 83 31.3
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-07 60.1 136 27.2
CAN.G1224.2 Capsicum annuum HOM05D003888 ORTHO05D007163 2.9e-07 60.1 132 30.3
AUR62037410 Chenopodium quinoa HOM05D008455 ORTHO05D009597 2.9e-07 60.1 99 34.3
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.8e-07 59.7 79 39.2
EL10As3g23351 Beta vulgaris HOM05D008455 ORTHO05D009597 4.9e-07 59.3 58 37.9
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 4.9e-07 59.3 81 33.3
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 4.9e-07 59.3 191 29.8
MBI13_g26301_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.9e-07 59.3 87 32.2
Rhsim06G0121300 Rhododendron simsii HOM05D007314 ORTHO05D010380 4.9e-07 59.3 100 30.0
GSVIVG01019142001 Vitis vinifera HOM05D008595 ORTHO05D009597 4.9e-07 59.3 83 31.3
MBI09_g15192_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.4e-07 58.9 90 31.1
Rhsim04G0083300 Rhododendron simsii HOM05D007314 ORTHO05D010380 6.4e-07 58.9 105 30.5
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 8.4e-07 58.5 106 31.1
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.4e-07 58.5 82 29.3
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.4e-07 58.5 105 33.3
AUR62033711 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.1e-06 58.2 99 34.3
COL.COLO4_16333 Corchorus olitorius HOM05D011604 ORTHO05D012513 1.1e-06 58.2 85 31.8
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.1e-06 58.2 191 29.8
Nn1g09472 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.1e-06 58.2 84 33.3
TAR633G1156 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.1e-06 58.2 105 32.4
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.4e-06 57.8 117 27.4
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.4e-06 57.8 117 27.4
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.4e-06 57.8 117 27.4
HanXRQChr04g0099061 Helianthus annuus HOM05D008488 ORTHO05D020588 1.4e-06 57.8 100 31.0
EL10Ac2g03235 Beta vulgaris HOM05D000107 ORTHO05D000062 1.9e-06 57.4 75 33.3
EL10Ac6g14230 Beta vulgaris HOM05D000107 ORTHO05D000062 1.9e-06 57.4 92 32.6
Medtr2g092960 Medicago truncatula HOM05D007793 ORTHO05D010104 1.9e-06 57.4 111 27.9
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.9e-06 57.4 83 33.7
TAR376G0246 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.9e-06 57.4 134 29.9
CSS0012868 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.4e-06 57.0 119 28.6
ECA234G2194 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.4e-06 57.0 81 30.9
Lj2g0009854 Lotus japonicus HOM05D008859 ORTHO05D007166 2.4e-06 57.0 138 28.3
Lj4g0009512 Lotus japonicus HOM05D001309 ORTHO05D000385 2.4e-06 57.0 105 25.7
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 2.4e-06 57.0 118 25.4
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.2e-06 56.6 117 27.4
AUR62032537 Chenopodium quinoa HOM05D009343 ORTHO05D011970 3.2e-06 56.6 78 34.6
AUR62037174 Chenopodium quinoa HOM05D009343 ORTHO05D000385 3.2e-06 56.6 78 34.6
ECA232G4413 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.2e-06 56.6 138 25.4
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 3.2e-06 56.6 196 25.5
TAR624G0746 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.2e-06 56.6 114 26.3
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 4.2e-06 56.2 187 26.2
AUR62031112 Chenopodium quinoa HOM05D009343 ORTHO05D000385 4.2e-06 56.2 78 34.6
ECA096G0001 Erigeron canadensis HOM05D008488 ORTHO05D000385 4.2e-06 56.2 81 30.9
ECA246G4823 Erigeron canadensis HOM05D008488 ORTHO05D000385 4.2e-06 56.2 81 30.9
Medtr7g027580 Medicago truncatula HOM05D010482 ORTHO05D000385 4.2e-06 56.2 79 34.2
EL10Ac2g02915 Beta vulgaris HOM05D000107 ORTHO05D000062 5.5e-06 55.8 135 25.9
Cfa009670 Carpinus fangiana HOM05D003120 ORTHO05D003568 7.1e-06 55.5 127 31.5
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 7.1e-06 55.5 138 25.4
Rhsim01G0098700 Rhododendron simsii HOM05D007314 ORTHO05D010380 7.1e-06 55.5 84 34.5
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 7.1e-06 55.5 110 28.2
TAR636G1099 Trochodendron aralioides HOM05D008595 ORTHO05D030706 7.1e-06 55.5 84 29.8
EL10Ac3g06448 Beta vulgaris HOM05D003888 ORTHO05D007163 9.3e-06 55.1 71 38.0
CSS0045334 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.3e-06 55.1 119 27.7
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.3e-06 55.1 110 28.2
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.3e-06 55.1 110 28.2
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 9.3e-06 55.1 110 28.2


User provided reference genes

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