Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 5.3e-40 167.2 80 100.0
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 2.6e-39 164.9 78 100.0
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 2.7e-36 154.8 78 94.9
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 4.6e-36 154.1 78 93.6
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 1.3e-35 152.5 78 92.3
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 1.8e-35 152.1 78 91.0
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 3.9e-35 151.0 78 89.7
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 8.7e-35 149.8 78 92.3
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.5e-34 149.1 79 89.9
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 1.5e-34 149.1 78 91.0
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 1.5e-34 149.1 78 91.0
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.5e-34 149.1 78 89.7
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 2.5e-34 148.3 78 91.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 2.5e-34 148.3 78 91.0
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.5e-34 148.3 79 88.6
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.5e-34 148.3 79 88.6
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 3.3e-34 147.9 78 89.7
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 3.3e-34 147.9 78 91.0
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 5.7e-34 147.1 78 89.7
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 5.7e-34 147.1 78 89.7
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 9.7e-34 146.4 78 88.5
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.3e-33 146.0 78 89.7
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.8e-33 144.8 74 91.9
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 4.8e-33 144.1 78 87.2
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 6.3e-33 143.7 78 87.2
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 8.2e-33 143.3 77 87.0
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 8.2e-33 143.3 77 87.0
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.1e-32 142.9 78 88.5
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.1e-32 142.9 77 87.0
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 1.1e-32 142.9 78 84.6
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.4e-32 142.5 74 91.9
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.4e-32 142.5 77 87.0
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.8e-32 142.1 77 87.0
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.8e-32 142.1 77 87.0
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 1.8e-32 142.1 77 85.7
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 1.8e-32 142.1 75 86.7
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.4e-32 141.7 77 88.3
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 2.4e-32 141.7 78 84.6
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 3.1e-32 141.4 79 86.1
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 3.1e-32 141.4 76 88.2
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 4.1e-32 141.0 78 83.3
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 5.3e-32 140.6 78 85.9
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 5.3e-32 140.6 77 84.4
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 5.3e-32 140.6 77 85.7
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 5.3e-32 140.6 77 84.4
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.3e-32 140.6 77 85.7
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 5.3e-32 140.6 77 85.7
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.9e-32 140.2 77 85.7
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 9.0e-32 139.8 77 85.7
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.2e-31 139.4 76 86.8
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.5e-31 139.0 78 82.1
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.5e-31 139.0 78 82.1
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 1.5e-31 139.0 78 83.3
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 1.5e-31 139.0 77 84.4
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 2.0e-31 138.7 77 84.4
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.6e-31 138.3 77 84.4
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 4.5e-31 137.5 76 85.5
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 5.9e-31 137.1 77 83.1
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 5.9e-31 137.1 77 81.8
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 7.7e-31 136.7 78 82.1
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 7.7e-31 136.7 78 84.6
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 7.7e-31 136.7 69 91.3
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 1.0e-30 136.3 78 79.5
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.7e-30 135.6 74 82.4
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.7e-30 135.6 74 83.8
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.7e-30 135.6 73 87.7
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 2.2e-30 135.2 78 80.8
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 2.9e-30 134.8 76 84.2
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 3.8e-30 134.4 74 86.5
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 3.8e-30 134.4 74 86.5
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 3.8e-30 134.4 77 81.8
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 3.8e-30 134.4 77 81.8
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 3.8e-30 134.4 77 81.8
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 3.8e-30 134.4 73 84.9
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 6.5e-30 133.7 77 80.5
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 6.5e-30 133.7 78 85.9
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 6.5e-30 133.7 77 80.5
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 6.5e-30 133.7 73 86.3
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 6.5e-30 133.7 78 82.1
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.1e-29 132.9 71 87.3
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.1e-29 132.9 78 80.8
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.1e-29 132.9 78 80.8
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.1e-29 132.9 78 80.8
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 1.1e-29 132.9 78 80.8
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 1.4e-29 132.5 77 79.2
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 1.4e-29 132.5 77 79.2
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.4e-29 132.5 77 79.2
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 2.5e-29 131.7 74 83.8
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 2.5e-29 131.7 77 79.2
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 2.5e-29 131.7 78 79.5
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 4.2e-29 131.0 77 79.2
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 5.5e-29 130.6 73 86.3
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.5e-29 130.6 70 88.6
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 7.2e-29 130.2 77 77.9
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 7.2e-29 130.2 77 81.8
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 9.4e-29 129.8 73 82.2
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.2e-28 129.4 77 80.5
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 2.1e-28 128.6 71 84.5
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 2.7e-28 128.3 76 81.6
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.7e-28 128.3 70 87.1
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 2.7e-28 128.3 76 80.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.6e-28 127.9 78 76.9
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 3.6e-28 127.9 73 83.6
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 4.6e-28 127.5 74 81.1
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 6.1e-28 127.1 77 77.9
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 7.9e-28 126.7 71 81.7
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 7.9e-28 126.7 71 81.7
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.0e-27 126.3 72 83.3
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.0e-27 126.3 74 81.1
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.8e-27 125.6 74 81.1
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.3e-27 125.2 78 78.2
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.3e-27 125.2 78 75.6
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 3.0e-27 124.8 73 80.8
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 3.9e-27 124.4 68 85.3
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 5.1e-27 124.0 77 75.3
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 2.5e-26 121.7 63 88.9
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.8e-25 118.2 74 75.7
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 1.8e-24 115.5 69 81.2
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 2.4e-24 115.2 62 88.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.3e-24 114.0 77 66.2
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.5e-23 110.9 77 64.9
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 5.9e-23 110.5 77 63.6
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.9e-23 110.5 77 64.9
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.9e-23 110.5 77 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 7.7e-23 110.2 73 68.5
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 3.6e-12 74.7 48 72.9
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 6.1e-12 73.9 54 68.5
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 8.0e-12 73.6 46 69.6
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 2.3e-11 72.0 48 72.9
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 4.0e-11 71.2 39 87.2
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 4.0e-11 71.2 63 50.8
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 8.8e-11 70.1 79 50.6
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 2.0e-10 68.9 59 49.2
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 8.2e-09 63.5 34 88.2


User provided reference genes

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