Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 1.8e-109 399.4 225 100.0
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 7.7e-105 384.0 225 95.6
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.5e-84 316.6 220 83.2
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 9.3e-66 254.2 216 69.0
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 1.7e-64 250.0 216 66.2
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 3.9e-64 248.8 227 64.8
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 1.3e-62 243.8 229 61.6
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 5.8e-60 235.0 214 61.7
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 7.6e-60 234.6 223 61.9
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.4e-58 230.3 222 62.2
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 1.9e-58 229.9 215 60.9
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 4.2e-58 228.8 222 59.5
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 6.0e-57 224.9 214 59.8
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 8.7e-56 221.1 215 58.1
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 3.3e-55 219.2 219 58.9
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 5.6e-55 218.4 215 61.4
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 7.4e-55 218.0 222 56.8
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.3e-54 217.2 215 57.7
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.6e-54 216.9 217 58.5
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 2.1e-54 216.5 228 55.3
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 2.1e-54 216.5 224 59.4
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 2.8e-54 216.1 217 60.8
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 3.6e-54 215.7 216 59.3
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 4.8e-54 215.3 216 60.6
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.1e-53 214.2 216 58.3
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 1.4e-53 213.8 218 59.2
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 3.1e-53 212.6 214 58.4
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 5.3e-53 211.8 220 56.4
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 1.5e-52 210.3 211 59.2
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.4e-52 209.1 170 66.5
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 3.4e-52 209.1 219 57.5
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 4.9e-51 205.3 214 62.1
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 8.4e-51 204.5 216 55.6
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 2.4e-50 203.0 217 56.2
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 7.9e-49 198.0 170 63.5
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 5.1e-48 195.3 221 52.0
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 6.7e-48 194.9 218 56.9
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 6.7e-48 194.9 221 52.0
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 8.7e-48 194.5 221 52.0
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 1.9e-47 193.4 239 53.1
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 7.4e-47 191.4 218 52.3
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 4.8e-46 188.7 183 60.1
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 6.2e-46 188.3 178 60.1
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 8.1e-46 188.0 228 51.8
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 8.1e-46 188.0 231 56.7
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 8.1e-46 188.0 223 52.0
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 5.3e-45 185.3 231 49.8
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 5.3e-45 185.3 221 49.8
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 1.2e-44 184.1 227 58.1
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.2e-44 184.1 224 51.3
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 1.5e-44 183.7 227 56.8
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.0e-44 183.3 232 53.9
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 2.0e-44 183.3 175 58.3
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 2.6e-44 183.0 235 48.9
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 4.5e-44 182.2 211 51.2
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 4.5e-44 182.2 218 54.6
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 1.0e-43 181.0 228 50.0
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 1.3e-43 180.6 215 54.0
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 1.7e-43 180.3 224 55.4
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 4.9e-43 178.7 210 57.1
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.1e-42 177.6 222 53.6
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 1.4e-42 177.2 159 62.9
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 5.5e-42 175.3 178 56.7
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 7.1e-42 174.9 236 48.3
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 1.2e-41 174.1 222 49.1
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.6e-41 173.7 225 50.2
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 2.1e-41 173.3 240 48.3
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 2.7e-41 172.9 240 47.5
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 4.6e-41 172.2 174 55.2
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 4.6e-41 172.2 225 50.7
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 6.0e-41 171.8 238 47.1
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 6.0e-41 171.8 218 49.5
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 7.9e-41 171.4 218 52.3
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.8e-40 170.2 238 47.1
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.8e-40 170.2 238 47.1
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 6.7e-40 168.3 179 57.5
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 1.5e-39 167.2 242 50.0
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 1.5e-39 167.2 242 50.0
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.9e-39 166.8 236 47.9
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 3.3e-39 166.0 225 50.2
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 5.7e-39 165.2 238 50.0
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 5.7e-39 165.2 238 50.0
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 5.7e-39 165.2 238 50.0
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 9.6e-39 164.5 220 51.4
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 3.7e-38 162.5 246 42.7
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 1.1e-37 161.0 238 48.3
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 2.4e-37 159.8 237 45.6
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 4.1e-37 159.1 246 45.9
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 6.9e-37 158.3 176 54.5
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 9.0e-37 157.9 184 52.2
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.2e-36 157.5 213 47.4
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 1.2e-36 157.5 215 48.8
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 6.5e-35 151.8 183 51.4
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.9e-34 150.2 218 46.3
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 4.6e-33 145.6 217 47.9
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.3e-32 144.1 221 42.1
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 1.8e-32 143.7 251 41.4
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 6.7e-32 141.7 213 46.5
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 1.9e-31 140.2 232 42.7
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 7.4e-31 138.3 214 44.4
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.2e-28 131.0 190 45.3
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 7.7e-28 128.3 221 41.6
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.9e-26 123.6 120 59.2
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 7.9e-25 118.2 156 50.0
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 2.2e-22 110.2 262 34.7
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 4.8e-22 109.0 188 39.9
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 6.9e-21 105.1 162 53.1
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 5.1e-16 89.0 54 81.5
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 1.7e-14 84.0 62 67.7
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 6.3e-14 82.0 67 67.2
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 2.0e-12 77.0 91 46.2
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 3.8e-11 72.8 92 45.7
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 2.5e-10 70.1 147 43.5
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 3.2e-10 69.7 80 52.5
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 4.2e-10 69.3 129 44.2
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 8.0e-09 65.1 92 44.6
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 2.3e-08 63.5 102 42.2
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 1.1e-07 61.2 99 42.4


User provided reference genes

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