Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 0.0e+00 1142.5 576 100.0
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.8e-238 829.3 521 79.7
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 9.2e-235 817.0 521 78.5
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 1.2e-231 806.6 522 77.6
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 6.1e-231 804.3 521 77.9
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 3.4e-229 798.5 521 77.2
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 3.2e-227 792.0 508 77.6
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 7.0e-227 790.8 509 76.6
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 1.9e-224 782.7 508 76.2
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 5.6e-224 781.2 508 76.0
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.6e-223 779.6 508 76.6
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 1.6e-223 779.6 508 76.2
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 2.1e-223 779.2 513 74.9
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 2.8e-223 778.9 508 75.8
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 8.0e-223 777.3 521 75.2
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.1e-222 776.9 508 75.8
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.1e-222 775.4 508 76.4
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.2e-221 773.5 508 75.4
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.0e-221 772.7 508 75.4
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.3e-220 770.0 522 75.3
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 2.9e-220 768.8 509 75.4
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.2e-219 765.4 510 75.1
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 7.0e-219 764.2 521 74.7
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 9.2e-219 763.8 527 72.7
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 2.7e-218 762.3 523 74.4
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 3.0e-217 758.8 521 72.9
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 8.6e-217 757.3 501 76.6
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 4.3e-216 755.0 509 74.3
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 5.6e-216 754.6 511 74.0
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 5.6e-216 754.6 511 74.0
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 2.8e-215 752.3 508 75.0
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 8.1e-215 750.7 513 73.5
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 1.1e-214 750.4 511 73.4
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 3.1e-214 748.8 521 73.1
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 3.4e-213 745.3 521 73.3
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 4.4e-213 745.0 509 73.5
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 7.5e-213 744.2 521 74.3
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 9.9e-213 743.8 510 73.7
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 9.9e-213 743.8 507 73.0
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.3e-212 743.4 529 71.6
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.2e-212 742.7 514 73.5
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 4.9e-212 741.5 510 73.5
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.9e-211 739.6 528 73.1
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 2.7e-210 735.7 508 73.0
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 2.7e-210 735.7 509 72.5
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.7e-209 733.0 509 73.3
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 3.9e-209 731.9 508 72.6
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 8.6e-209 730.7 544 69.5
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 1.5e-208 729.9 509 71.1
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 2.5e-208 729.2 511 72.0
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 3.3e-208 728.8 509 73.3
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 7.3e-208 727.6 509 73.1
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 1.2e-207 726.9 509 72.1
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 1.2e-207 726.9 508 71.5
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.6e-207 725.3 508 72.4
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 8.1e-207 724.2 509 72.5
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.1e-206 723.8 512 73.0
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.1e-206 723.8 509 72.3
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 3.1e-206 722.2 511 72.4
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 6.8e-206 721.1 511 70.6
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 1.5e-205 719.9 509 71.9
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 4.4e-205 718.4 553 67.8
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 1.7e-204 716.5 516 69.6
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 3.8e-204 715.3 515 70.5
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 3.8e-204 715.3 536 69.0
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 3.2e-203 712.2 522 69.7
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 3.5e-202 708.8 518 72.0
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 3.5e-202 708.8 521 70.1
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 4.6e-202 708.4 510 70.4
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 6.0e-202 708.0 532 67.5
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 6.0e-202 708.0 522 68.4
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 6.6e-201 704.5 509 70.5
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 1.1e-200 703.7 510 70.4
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 2.5e-200 702.6 511 69.5
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 3.3e-200 702.2 522 68.6
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 6.2e-199 698.0 529 66.7
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 4.0e-198 695.3 488 73.6
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.1e-195 687.2 525 68.6
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 3.2e-195 685.6 538 67.1
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 9.3e-195 684.1 524 67.4
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 1.6e-194 683.3 479 70.6
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 6.0e-194 681.4 525 65.1
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 1.0e-193 680.6 510 70.8
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 5.1e-193 678.3 511 66.5
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 1.5e-192 676.8 524 66.2
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 2.8e-191 672.5 525 67.2
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.8e-190 669.8 526 66.5
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 4.0e-190 668.7 510 68.6
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 6.9e-190 667.9 467 73.2
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.7e-188 663.3 524 64.1
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 2.2e-188 662.9 487 70.4
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 3.8e-188 662.1 527 66.2
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 4.2e-187 658.7 447 73.2
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 9.3e-187 657.5 524 64.1
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 3.5e-186 655.6 524 63.4
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 6.7e-185 651.4 524 63.5
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 1.9e-184 649.8 523 63.9
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 2.8e-183 646.0 506 67.0
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 4.0e-182 642.1 446 72.6
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 1.3e-180 637.1 523 63.9
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.9e-180 636.0 523 63.7
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 1.4e-179 633.6 507 65.5
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 3.2e-179 632.5 447 71.8
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 7.1e-179 631.3 522 63.6
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.2e-178 630.6 507 64.1
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 6.7e-177 624.8 524 63.0
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 6.7e-177 624.8 524 63.0
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 8.2e-175 617.8 492 61.6
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 2.4e-174 616.3 509 64.2
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 9.0e-174 614.4 448 68.8
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 4.9e-172 608.6 506 60.9
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 2.5e-160 569.7 402 71.6
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 2.2e-159 566.6 525 58.9
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 3.7e-159 565.8 412 70.4
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 2.3e-153 546.6 464 61.9
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 4.8e-151 538.9 409 65.0
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.5e-147 527.3 532 53.0
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 2.5e-139 500.0 523 52.8
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 4.8e-135 485.7 348 71.6
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 1.4e-134 484.2 531 49.7
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 5.9e-133 478.8 323 75.9
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 5.9e-133 478.8 497 51.7
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 6.8e-129 465.3 538 48.7
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 4.7e-122 442.6 362 62.7
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 6.1e-114 415.6 281 73.7
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 9.5e-99 365.2 517 44.1
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 1.5e-96 357.8 527 40.6
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 7.1e-94 349.0 524 43.3
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 7.8e-93 345.5 247 72.9
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 1.2e-85 321.6 495 41.2
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.1e-73 282.0 201 71.6
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 7.9e-61 239.2 373 44.2
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 2.0e-56 224.6 446 36.8
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 1.8e-49 201.4 142 70.4
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 7.2e-46 189.5 142 68.3
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.2e-42 177.9 293 39.2
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 1.1e-38 165.6 126 63.5
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 1.1e-35 155.6 243 39.5
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.0e-35 154.8 193 46.1
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 2.6e-35 154.5 114 70.2
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.9e-30 138.3 88 78.4
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 2.6e-27 127.9 173 48.0
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.8e-26 124.4 154 46.1
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.0e-23 115.9 85 68.2
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 1.3e-23 115.5 77 70.1
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 1.3e-18 99.0 204 32.4
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 1.8e-17 95.1 88 60.2
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.4e-17 94.7 76 63.2
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 5.4e-17 93.6 87 56.3
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 8.8e-12 76.3 65 60.0


User provided reference genes

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