Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 1.8e-26 122.1 75 100.0
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 1.1e-15 86.3 69 72.5
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 1.6e-14 82.4 74 63.5
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 1.6e-14 82.4 74 63.5
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 3.6e-14 81.3 74 63.5
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 3.0e-13 78.2 70 65.7
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 1.5e-12 75.9 70 60.0
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 2.6e-12 75.1 74 59.5
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 2.6e-12 75.1 74 59.5
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 3.4e-12 74.7 72 61.1
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 3.4e-12 74.7 73 60.3
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 3.4e-12 74.7 74 60.8
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 5.7e-12 73.9 64 65.6
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 9.7e-12 73.2 73 56.2
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 1.7e-11 72.4 72 58.3
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 1.7e-11 72.4 74 59.5
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 1.7e-11 72.4 74 55.4
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 2.2e-11 72.0 74 59.5
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 2.2e-11 72.0 74 59.5
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 3.7e-11 71.2 74 56.8
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 4.8e-11 70.9 74 56.8
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 4.8e-11 70.9 74 56.8
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 4.8e-11 70.9 74 55.4
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 4.8e-11 70.9 74 55.4
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 4.8e-11 70.9 74 55.4
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 4.8e-11 70.9 74 58.1
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 6.3e-11 70.5 72 58.3
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 6.3e-11 70.5 74 56.8
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 1.1e-10 69.7 70 55.7
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 1.4e-10 69.3 73 53.4
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 1.8e-10 68.9 74 56.8
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 3.1e-10 68.2 74 56.8
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 3.1e-10 68.2 74 56.8
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 5.3e-10 67.4 74 54.1
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 5.3e-10 67.4 74 55.4
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 5.3e-10 67.4 82 51.2
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 5.3e-10 67.4 74 54.1
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 7.0e-10 67.0 70 55.7
Manes.15G168900 Manihot esculenta HOM05D007324 ORTHO05D007884 1.2e-09 66.2 40 87.5
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 1.2e-09 66.2 74 55.4
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 2.0e-09 65.5 74 54.1
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 3.5e-09 64.7 74 56.8
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 4.5e-09 64.3 74 52.7
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 5.9e-09 63.9 74 54.1
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 1.3e-08 62.8 74 58.1
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.2e-08 62.0 104 43.3
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 2.9e-08 61.6 74 51.4
Rhsim07G0125700 Rhododendron simsii HOM05D007324 ORTHO05D007884 2.9e-08 61.6 64 62.5
CAN.G201.20 Capsicum annuum HOM05D007324 ORTHO05D007884 3.8e-08 61.2 74 56.8
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 6.5e-08 60.5 69 55.1
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 6.5e-08 60.5 74 54.1
FAN08G0008 Fragaria x ananassa HOM05D007324 ORTHO05D007884 1.1e-07 59.7 74 55.4
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 1.1e-07 59.7 70 52.9
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 2.5e-07 58.5 74 47.3
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.5e-07 58.5 74 50.0
vmacro22242 Vaccinium macrocarpon HOM05D007324 ORTHO05D007884 2.5e-07 58.5 64 56.2
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 5.5e-07 57.4 74 48.6
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 9.4e-07 56.6 57 59.6
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 2.1e-06 55.5 74 52.7
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 2.7e-06 55.1 70 52.9
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 2.7e-06 55.1 74 50.0
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 2.7e-06 55.1 69 50.7
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 6.1e-06 53.9 69 47.8
Prupe.5G039400 Prunus persica HOM05D007324 ORTHO05D007884 8.0e-06 53.5 51 60.8


User provided reference genes

Program Settings