Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 2.4e-142 508.8 256 100.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 4.7e-98 361.7 256 69.5
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 6.6e-92 341.3 254 65.4
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 2.0e-85 319.7 256 61.3
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 9.5e-83 310.8 258 59.7
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 3.6e-82 308.9 255 59.6
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 4.7e-82 308.5 254 57.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 6.1e-82 308.1 255 59.2
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 8.0e-82 307.8 254 57.9
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.0e-81 307.4 255 59.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 1.8e-81 306.6 250 61.2
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 5.2e-81 305.1 256 59.8
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.8e-80 301.6 256 56.6
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.7e-79 300.1 243 60.5
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 6.4e-79 298.1 256 55.5
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 6.4e-79 298.1 256 57.0
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.0e-77 293.1 256 56.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.0e-77 291.6 255 54.5
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.7e-76 290.0 256 57.4
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 6.6e-76 288.1 256 57.4
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 6.6e-76 288.1 244 56.6
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.1e-75 287.3 256 54.7
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.5e-75 287.0 273 53.1
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.5e-75 287.0 254 55.5
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.9e-75 286.6 240 57.5
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 9.5e-75 284.3 257 57.2
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.8e-73 280.0 256 53.9
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-72 276.6 244 58.2
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.0e-72 276.6 254 54.3
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 9.8e-72 274.2 256 52.7
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.3e-71 273.9 254 52.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.1e-70 268.9 226 58.4
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.6e-69 266.9 255 52.9
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.7e-69 266.2 243 54.7
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 6.0e-69 265.0 241 56.4
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.0e-68 264.2 254 52.0
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.3e-68 263.1 256 52.7
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 5.1e-68 261.9 254 50.8
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 6.6e-68 261.5 226 56.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 8.6e-68 261.2 253 51.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.9e-67 260.0 254 51.2
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.6e-67 258.5 257 51.4
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 7.3e-67 258.1 256 50.8
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 9.5e-67 257.7 254 50.4
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 9.5e-67 257.7 254 49.6
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.6e-66 256.9 256 50.8
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 3.6e-66 255.8 238 52.9
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.1e-65 254.2 243 51.9
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.1e-65 254.2 253 51.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.4e-65 253.8 244 52.5
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.8e-65 253.4 243 50.6
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 2.3e-65 253.1 254 48.4
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.3e-65 253.1 238 54.2
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 3.1e-65 252.7 254 48.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 3.1e-65 252.7 244 52.5
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 4.0e-65 252.3 254 50.4
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 6.8e-65 251.5 254 50.4
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 8.9e-65 251.1 241 52.7
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.0e-64 250.0 192 63.0
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 4.4e-64 248.8 243 51.4
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 5.8e-64 248.4 256 49.2
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 9.9e-64 247.7 254 49.6
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.2e-63 246.5 254 48.4
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.7e-63 245.7 242 51.2
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 8.3e-63 244.6 253 47.8
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 8.3e-63 244.6 233 51.9
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.4e-62 243.8 235 51.1
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.4e-62 243.8 239 50.6
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.9e-62 243.4 233 51.5
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 3.2e-62 242.7 254 48.8
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 4.1e-62 242.3 232 50.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 7.1e-62 241.5 236 50.8
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 7.1e-62 241.5 226 53.1
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 9.2e-62 241.1 255 47.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.6e-61 240.4 255 46.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.1e-61 240.0 255 46.3
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.1e-61 240.0 247 49.0
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.7e-61 239.6 255 48.2
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.7e-61 239.6 231 52.4
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.7e-61 239.6 231 51.9
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 4.6e-61 238.8 241 49.4
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 6.0e-61 238.4 243 51.0
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 7.8e-61 238.0 256 48.4
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 7.8e-61 238.0 254 49.2
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.3e-60 236.5 242 49.2
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.0e-60 236.1 235 51.1
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 3.0e-60 236.1 222 52.3
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 3.0e-60 236.1 252 47.2
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 3.0e-60 236.1 254 46.1
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 5.1e-60 235.3 243 47.7
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 8.6e-60 234.6 254 47.2
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 1.1e-59 234.2 237 48.1
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.1e-59 234.2 255 47.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.9e-59 233.4 260 46.5
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 3.3e-59 232.6 243 47.3
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.3e-59 232.3 243 46.9
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.3e-59 232.3 256 45.7
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 7.3e-59 231.5 255 47.8
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 7.3e-59 231.5 215 53.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.2e-58 230.7 233 48.5
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 4.7e-58 228.8 251 45.8
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.7e-58 228.8 233 48.1
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 8.1e-58 228.0 255 45.9
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 8.1e-58 228.0 255 45.9
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 8.1e-58 228.0 249 47.4
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.8e-57 226.9 208 54.3
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 3.1e-57 226.1 182 59.3
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.8e-56 221.9 236 47.9
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 7.6e-56 221.5 256 43.0
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.2e-55 219.9 210 54.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.2e-55 219.9 210 54.3
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.9e-55 219.5 256 43.0
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 6.4e-55 218.4 227 48.5
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.4e-54 217.2 245 46.9
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.9e-54 216.9 239 48.1
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 4.2e-54 215.7 166 64.5
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 5.4e-54 215.3 240 45.4
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 5.4e-54 215.3 267 40.8
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 2.1e-53 213.4 238 48.3
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 7.8e-53 211.5 240 43.3
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.0e-52 209.5 248 46.0
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 5.1e-52 208.8 213 50.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.4e-49 200.7 230 45.7
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 5.3e-49 198.7 256 42.6
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.8e-47 192.6 190 50.5
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.8e-47 192.6 190 50.5
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 8.4e-47 191.4 223 45.3
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 9.3e-46 188.0 248 44.4
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-45 187.6 242 42.6
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.7e-45 186.4 210 46.2
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.6e-42 177.2 217 45.2
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 5.3e-41 172.2 260 39.2
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 6.4e-39 165.2 201 44.3
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 3.9e-36 156.0 143 55.2
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.1e-35 154.5 244 36.9
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 7.4e-35 151.8 238 37.8
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 4.5e-32 142.5 170 44.1
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.7e-28 128.6 101 59.4
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 7.4e-27 125.2 166 42.2
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.3e-26 124.4 115 52.2
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.7e-26 122.9 86 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 4.8e-26 122.5 233 36.9
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.2e-23 113.6 247 31.6
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.0e-20 104.8 158 38.6
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.9e-20 102.8 98 54.1
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-19 100.9 134 38.1
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 7.4e-19 98.6 100 51.0
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 7.4e-19 98.6 148 39.2
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 7.7e-16 88.6 310 29.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.6e-13 80.9 73 47.9
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.4e-06 57.8 49 51.0


User provided reference genes

Program Settings