Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G162502 Manihot esculenta HOM05D005517 ORTHO05D006760 3.9e-32 141.0 77 100.0
Glyma.19G093900 Glycine max HOM05D005517 ORTHO05D006760 9.3e-26 119.8 77 83.1
Potri.001G328100 Populus trichocarpa HOM05D005517 ORTHO05D006760 1.6e-25 119.0 77 85.7
Potri.017G066388 Populus trichocarpa HOM05D005517 ORTHO05D006760 2.7e-25 118.2 74 87.8
CiPaw.03G057500 Carya illinoinensis HOM05D005517 ORTHO05D006760 1.0e-24 116.3 77 81.8
Phvul.001G091300 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 1.0e-24 116.3 77 79.2
Sabra17G0058600 Salix brachista HOM05D005517 ORTHO05D006760 3.9e-24 114.4 74 82.4
TAR371G1004 Trochodendron aralioides HOM05D005517 ORTHO05D006760 3.9e-24 114.4 77 80.5
GSVIVG01028670001 Vitis vinifera HOM05D005517 ORTHO05D006760 6.7e-24 113.6 77 81.8
Ciclev10017370m.g Citrus clementina HOM05D005517 ORTHO05D006760 1.9e-23 112.1 77 80.5
Glyma.16G054600 Glycine max HOM05D005517 ORTHO05D006760 2.5e-23 111.7 75 77.3
TAR629G2363 Trochodendron aralioides HOM05D005517 ORTHO05D006760 2.5e-23 111.7 77 76.6
CANSAT64G1159 Cannabis sativa HOM05D005517 ORTHO05D006760 4.3e-23 110.9 77 77.9
Atru.chr6.2589 Acer truncatum HOM05D005517 ORTHO05D006760 9.6e-23 109.8 77 81.8
TWI74G0054 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.3e-22 109.4 77 77.9
TWI74G0227 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.3e-22 109.4 77 77.9
ClCG05G013610 Citrullus lanatus HOM05D005517 ORTHO05D006760 2.8e-22 108.2 77 79.2
Nn3g16415 Nelumbo nucifera HOM05D005517 ORTHO05D006760 2.8e-22 108.2 77 77.9
Eucgr.H04420 Eucalyptus grandis HOM05D005517 ORTHO05D006760 3.7e-22 107.8 77 80.5
Cpa.g.sc70.124 Carica papaya HOM05D005517 ORTHO05D006760 8.2e-22 106.7 73 79.5
THA.LOC104803813 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 8.2e-22 106.7 73 75.3
CARHR199240 Cardamine hirsuta HOM05D005517 ORTHO05D006760 1.1e-21 106.3 73 76.7
Lj1g0000511 Lotus japonicus HOM05D005517 ORTHO05D006760 1.1e-21 106.3 77 75.3
BcaC04g19059 Brassica carinata HOM05D005517 ORTHO05D006760 1.8e-21 105.5 73 72.6
C09p63000 Brassica napus HOM05D005517 ORTHO05D006760 1.8e-21 105.5 73 72.6
BolC9t59138H Brassica oleracea HOM05D005517 ORTHO05D006760 1.8e-21 105.5 73 72.6
A10p24320 Brassica napus HOM05D005517 ORTHO05D006760 4.1e-21 104.4 73 71.2
BraA10t44498Z Brassica rapa HOM05D005517 ORTHO05D006760 4.1e-21 104.4 73 71.2
Carub.0006s1230 Capsella rubella HOM05D005517 ORTHO05D006760 4.1e-21 104.4 74 75.7
Duzib187G1036 Durio zibethinus HOM05D005517 ORTHO05D006760 4.1e-21 104.4 69 81.2
Gohir.A07G229900 Gossypium hirsutum HOM05D005517 ORTHO05D006760 4.1e-21 104.4 74 79.7
Gohir.D07G237100 Gossypium hirsutum HOM05D005517 ORTHO05D006760 4.1e-21 104.4 74 79.7
Gorai.001G273000 Gossypium raimondii HOM05D005517 ORTHO05D006760 4.1e-21 104.4 74 79.7
Lalb_Chr16g0380111 Lupinus albus HOM05D005517 ORTHO05D006760 4.1e-21 104.4 77 76.6
Os05g0517800 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 4.1e-21 104.4 78 73.1
HPP92_000894 Vanilla planifolia HOM05D005517 ORTHO05D006760 4.1e-21 104.4 77 71.4
RcHm_v2.0_Chr1g0371371 Rosa chinensis HOM05D005517 ORTHO05D006760 6.9e-21 103.6 77 76.6
RcHm_v2.0_Chr7g0186891 Rosa chinensis HOM05D005517 ORTHO05D006760 6.9e-21 103.6 77 76.6
arahy.Tifrunner.gnm1.ann1.3828X0 Arachis hypogaea HOM05D005517 ORTHO05D006760 9.0e-21 103.2 77 75.3
BcaB01g06344 Brassica carinata HOM05D005517 ORTHO05D006760 9.0e-21 103.2 73 71.2
Duzib264G0094 Durio zibethinus HOM05D005517 ORTHO05D006760 9.0e-21 103.2 69 81.2
Medtr7g028755 Medicago truncatula HOM05D005517 ORTHO05D006760 9.0e-21 103.2 77 77.9
Thecc.04G039500 Theobroma cacao HOM05D005517 ORTHO05D006760 9.0e-21 103.2 69 81.2
BcaC03g13514 Brassica carinata HOM05D005517 ORTHO05D006760 1.2e-20 102.8 73 71.2
BcaC03g13515 Brassica carinata HOM05D005517 ORTHO05D006760 1.2e-20 102.8 73 71.2
AUR62006995 Chenopodium quinoa HOM05D005517 ORTHO05D006760 1.2e-20 102.8 75 69.3
COL.COLO4_13282 Corchorus olitorius HOM05D005517 ORTHO05D006760 1.2e-20 102.8 68 82.4
Dinv33325 Davidia involucrata HOM05D005517 ORTHO05D006760 1.2e-20 102.8 77 75.3
Migut.F00052 Erythranthe guttata HOM05D005517 ORTHO05D006760 1.2e-20 102.8 77 72.7
AT5G14105 Arabidopsis thaliana HOM05D005517 ORTHO05D006760 1.5e-20 102.4 74 75.7
BcaB08g36959 Brassica carinata HOM05D005517 ORTHO05D006760 1.5e-20 102.4 73 69.9
Zm00001eb293020 Zea mays HOM05D005517 ORTHO05D006760 1.5e-20 102.4 78 70.5
A02p02340 Brassica napus HOM05D005517 ORTHO05D006760 2.0e-20 102.1 73 71.2
BraA02t05205Z Brassica rapa HOM05D005517 ORTHO05D006760 2.0e-20 102.1 73 71.2
CsaV3_3G026940 Cucumis sativus L. HOM05D005517 ORTHO05D006760 2.0e-20 102.1 77 77.9
Duzib147G1371 Durio zibethinus HOM05D005517 ORTHO05D006760 2.0e-20 102.1 69 81.2
CiPaw.04G038900 Carya illinoinensis HOM05D005517 ORTHO05D006760 2.6e-20 101.7 69 81.2
Ca_26962_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 2.6e-20 101.7 77 75.3
Prupe.5G129500 Prunus persica HOM05D005517 ORTHO05D006760 2.6e-20 101.7 77 76.6
Aa31LG11G14910 Aethionema arabicum HOM05D005517 ORTHO05D006760 3.4e-20 101.3 73 71.2
QL10p050767 Quercus lobata HOM05D005517 ORTHO05D006760 3.4e-20 101.3 68 80.9
BcaNung06018 Brassica carinata HOM05D005517 ORTHO05D006760 4.5e-20 100.9 73 69.9
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 4.5e-20 100.9 64 82.8
CDE08G1355 Ceratophyllum demersum HOM05D005517 ORTHO05D006760 5.9e-20 100.5 77 70.1
Gohir.D04G075800 Gossypium hirsutum HOM05D005517 ORTHO05D006760 5.9e-20 100.5 69 76.8
Psat6g022360 Pisum sativum HOM05D005517 ORTHO05D006760 5.9e-20 100.5 77 72.7
Aqoxy1G01489 Aquilegia oxysepala HOM05D005517 ORTHO05D006760 7.6e-20 100.1 77 71.4
Cc10_g16370 Coffea canephora HOM05D005517 ORTHO05D006760 1.0e-19 99.8 77 74.0
CSS0012820 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 1.7e-19 99.0 77 74.0
CAN.G473.115 Capsicum annuum HOM05D005517 ORTHO05D006760 1.7e-19 99.0 77 72.7
AUR62000640 Chenopodium quinoa HOM05D005517 ORTHO05D006760 1.7e-19 99.0 69 71.0
MELO3C014894.2 Cucumis melo HOM05D005517 ORTHO05D006760 2.2e-19 98.6 77 74.0
Dinv25651 Davidia involucrata HOM05D005517 ORTHO05D006760 2.2e-19 98.6 77 72.7
Aa31LG5G11080 Aethionema arabicum HOM05D005517 ORTHO05D006760 3.8e-19 97.8 68 75.0
BcaC03g13513 Brassica carinata HOM05D005517 ORTHO05D006760 3.8e-19 97.8 72 68.1
C02p06560 Brassica napus HOM05D005517 ORTHO05D006760 8.5e-19 96.7 73 69.9
Lalb_Chr05g0214841 Lupinus albus HOM05D005517 ORTHO05D006760 8.5e-19 96.7 77 72.7
Solyc04g009570.3 Solanum lycopersicum HOM05D005517 ORTHO05D006760 8.5e-19 96.7 77 68.8
Sopen04g004730 Solanum pennellii HOM05D005517 ORTHO05D006760 8.5e-19 96.7 77 68.8
PGSC0003DMG400032535 Solanum tuberosum HOM05D005517 ORTHO05D006760 8.5e-19 96.7 77 68.8
TWI34G0084 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 8.5e-19 96.7 77 74.0
TWI34G1158 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 8.5e-19 96.7 77 74.0
FvH4_5g10930 Fragaria vesca HOM05D005517 ORTHO05D006760 1.1e-18 96.3 80 72.5
FAN08G0577 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.1e-18 96.3 80 72.5
FAN13G3313 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.1e-18 96.3 80 72.5
FAN18G2496 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.1e-18 96.3 80 72.5
MBI06_g06692_MAGBIO Magnolia biondii HOM05D005517 ORTHO05D006760 1.1e-18 96.3 77 74.0
PSO302G0245 Papaver somniferum HOM05D005517 ORTHO05D006760 1.1e-18 96.3 77 67.5
vmacro22457 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 1.4e-18 95.9 77 70.1
Cc03_g13370 Coffea canephora HOM05D005517 ORTHO05D006760 1.9e-18 95.5 77 68.8
Peaxi162Scf00420g00633 Petunia axillaris HOM05D005517 ORTHO05D006760 1.9e-18 95.5 77 66.2
Hund07167 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.9e-18 95.5 75 64.0
PSO210G3561 Papaver somniferum HOM05D005517 ORTHO05D006760 3.2e-18 94.7 77 67.5
Hma1.2p1_1057F.1_g252720 Hydrangea macrophylla HOM05D005517 ORTHO05D006760 5.5e-18 94.0 77 71.4
Medtr3g007670 Medicago truncatula HOM05D005517 ORTHO05D006760 7.2e-18 93.6 78 69.2
Oeu063019.1 Olea europaea HOM05D005517 ORTHO05D006760 7.2e-18 93.6 77 68.8
Rhsim10G0005200 Rhododendron simsii HOM05D005517 ORTHO05D006760 9.3e-18 93.2 77 68.8
Hund05668 Selenicereus undatus HOM05D005517 ORTHO05D006760 9.3e-18 93.2 78 67.9
Sopen02g038880 Solanum pennellii HOM05D005517 ORTHO05D006760 9.3e-18 93.2 77 68.8
EL10Ac4g09777 Beta vulgaris HOM05D005517 ORTHO05D006760 1.2e-17 92.8 75 69.3
PGSC0003DMG402020250 Solanum tuberosum HOM05D005517 ORTHO05D006760 1.2e-17 92.8 77 68.8
TWI60G0382 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.2e-17 92.8 77 74.0
Psat5g229880 Pisum sativum HOM05D005517 ORTHO05D006760 1.6e-17 92.4 77 67.5
Nitab4.5_0007375g0080 Nicotiana tabacum HOM05D005517 ORTHO05D006760 2.1e-17 92.0 77 66.2
TPR.G30072 Trifolium pratense HOM05D005517 ORTHO05D006760 2.1e-17 92.0 77 66.2
SEGI_12962 Sequoiadendron giganteum HOM05D005517 ORTHO05D006760 2.7e-17 91.7 77 61.0
CSS0038475 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 3.6e-17 91.3 77 67.5
HanXRQChr02g0035131 Helianthus annuus HOM05D005517 ORTHO05D006760 3.6e-17 91.3 74 70.3
Lsat_1_v5_gn_1_29421 Lactuca sativa HOM05D005517 ORTHO05D006760 3.6e-17 91.3 74 68.9
Sabra16G0209900 Salix brachista HOM05D005517 ORTHO05D006760 4.6e-17 90.9 136 47.8
Rhsim08G0041900 Rhododendron simsii HOM05D005517 ORTHO05D006760 6.1e-17 90.5 77 67.5
Lsat_1_v5_gn_4_78980 Lactuca sativa HOM05D005517 ORTHO05D006760 7.9e-17 90.1 74 70.3
Ca_14034_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 1.0e-16 89.7 69 66.7
EL10Ac7g18130 Beta vulgaris HOM05D005517 ORTHO05D006760 1.8e-16 89.0 75 64.0
ECA232G0857 Erigeron canadensis HOM05D005517 ORTHO05D006760 1.8e-16 89.0 74 68.9
Thhalv10021865m.g Eutrema salsugineum HOM05D005517 ORTHO05D006760 3.0e-16 88.2 69 71.0
PGR142G3118 Punica granatum HOM05D005517 ORTHO05D006760 3.9e-16 87.8 77 70.1
Haze_14891 Corylus avellana HOM05D005517 ORTHO05D006760 1.1e-15 86.3 141 45.4
MD06G1118400 Malus domestica HOM05D005517 ORTHO05D006760 1.1e-15 86.3 77 67.5
MD14G1126500 Malus domestica HOM05D005517 ORTHO05D006760 1.9e-15 85.5 78 66.7
THA.LOC104814182 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 2.5e-15 85.1 52 82.7
HanXRQChr16g0497941 Helianthus annuus HOM05D005517 ORTHO05D006760 7.4e-15 83.6 74 66.2
Phvul.009G125500 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 7.4e-15 83.6 52 78.8
arahy.Tifrunner.gnm1.ann1.9JMW1H Arachis hypogaea HOM05D005517 ORTHO05D006760 1.6e-14 82.4 50 84.0
AagrBONN_evm.TU.Sc2ySwM_228.2988 Anthoceros agrestis HOM05D005517 ORTHO05D006760 5.3e-13 77.4 77 57.1
Cc02_g28320 Coffea canephora HOM05D005517 ORTHO05D006760 2.6e-12 75.1 61 68.9
Prupe.2G009500 Prunus persica HOM05D005517 ORTHO05D006760 5.9e-12 73.9 77 66.2
TPR.G36037 Trifolium pratense HOM05D005517 ORTHO05D006760 1.7e-11 72.4 50 70.0
Peaxi162Scf00064g01122 Petunia axillaris HOM05D005517 ORTHO05D006760 2.2e-11 72.0 66 54.5
Os03g0733000 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 2.9e-11 71.6 78 52.6
vmacro05969 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 3.2e-10 68.2 72 54.2
Mapoly0055s0070 Marchantia polymorpha HOM05D005517 ORTHO05D006760 5.5e-10 67.4 76 47.4
Pp3c14_7680 Physcomitrium patens HOM05D005517 ORTHO05D006760 3.0e-08 61.6 59 52.5
Pp3c1_33450 Physcomitrium patens HOM05D005517 ORTHO05D006760 3.0e-08 61.6 77 44.2
Sed0001513 Sechium edule HOM05D005517 ORTHO05D006760 2.6e-07 58.5 34 88.2


User provided reference genes

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