Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 2.8e-185 651.7 314 100.0
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.2e-142 509.2 314 79.9
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 3.2e-141 505.4 314 78.7
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 9.4e-141 503.8 314 77.4
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 6.1e-140 501.1 314 77.4
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 8.5e-134 480.7 314 75.5
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 9.4e-133 477.2 314 75.2
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 2.3e-131 472.6 324 74.7
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 6.3e-129 464.5 313 74.1
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.1e-128 463.8 285 78.2
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 7.0e-128 461.1 306 76.8
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 5.9e-127 458.0 290 76.6
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 8.5e-126 454.1 342 67.5
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 8.5e-126 454.1 265 79.2
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 3.2e-125 452.2 305 74.1
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.1e-124 449.5 313 70.6
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 2.1e-124 449.5 303 74.6
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 6.3e-121 438.0 301 71.8
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.4e-120 436.8 265 80.0
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 4.1e-120 435.3 297 72.4
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 9.1e-120 434.1 276 76.1
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 1.6e-119 433.3 291 71.1
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 3.5e-119 432.2 266 76.7
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 5.9e-119 431.4 297 70.0
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 1.0e-118 430.6 285 74.0
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 2.2e-118 429.5 277 76.9
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 3.8e-118 428.7 293 75.1
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 6.5e-118 427.9 257 79.8
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 6.5e-118 427.9 288 73.3
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 6.5e-118 427.9 304 70.1
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 8.5e-118 427.6 323 69.3
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 8.5e-118 427.6 274 76.3
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 1.1e-117 427.2 279 73.5
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 3.2e-117 425.6 279 73.5
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 7.2e-117 424.5 279 73.1
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 7.2e-117 424.5 279 73.1
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 7.2e-117 424.5 279 73.1
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 2.1e-116 422.9 274 77.0
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 2.1e-116 422.9 301 68.8
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 3.6e-116 422.2 310 65.8
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 4.7e-116 421.8 272 74.3
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 4.7e-116 421.8 276 74.6
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 4.7e-116 421.8 270 74.8
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 6.1e-116 421.4 270 74.8
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 8.0e-116 421.0 279 72.8
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 1.0e-115 420.6 289 69.6
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 3.0e-115 419.1 275 71.3
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 3.4e-114 415.6 279 72.0
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 4.4e-114 415.2 273 72.5
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 4.4e-114 415.2 293 70.3
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 4.4e-114 415.2 293 70.3
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.3e-113 413.7 271 73.8
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 1.7e-113 413.3 267 71.9
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 1.7e-113 413.3 270 74.1
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 1.7e-113 413.3 303 69.0
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 1.8e-112 409.8 246 76.0
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 1.6e-111 406.8 265 74.0
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 4.5e-111 405.2 250 76.0
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 5.0e-110 401.7 246 77.6
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 1.1e-109 400.6 312 64.4
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 1.5e-109 400.2 248 76.6
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 2.5e-109 399.4 287 69.3
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 8.0e-108 394.4 293 67.6
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 5.2e-107 391.7 265 69.4
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.0e-106 389.8 263 70.3
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 2.0e-106 389.8 303 64.7
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 7.5e-106 387.9 289 67.1
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 1.3e-105 387.1 295 64.1
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 1.7e-105 386.7 290 66.6
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 3.7e-105 385.6 314 64.0
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 4.9e-105 385.2 305 61.3
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 8.3e-105 384.4 290 66.6
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 2.4e-104 382.9 285 65.3
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 2.3e-102 376.3 270 67.8
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 2.3e-102 376.3 295 63.4
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 2.1e-100 369.8 253 71.5
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 1.5e-98 363.6 293 61.4
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 2.9e-97 359.4 301 59.5
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 3.2e-96 355.9 230 70.9
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.7e-95 352.8 240 70.0
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 7.8e-95 351.3 295 65.8
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 2.3e-94 349.7 279 63.1
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 5.0e-94 348.6 248 66.5
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 3.3e-93 345.9 306 56.5
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 6.8e-91 338.2 205 79.0
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 1.5e-90 337.0 296 60.1
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 2.4e-88 329.7 246 67.5
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 7.8e-87 324.7 224 73.2
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 1.9e-85 320.1 249 61.8
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 7.3e-85 318.2 261 58.6
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 1.7e-81 307.0 225 69.8
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 6.4e-81 305.1 177 81.9
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 1.5e-77 293.9 239 62.3
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 4.0e-75 285.8 255 55.7
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.5e-74 283.9 212 66.0
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 1.7e-73 280.4 166 76.5
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 1.7e-73 280.4 207 68.1
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 1.1e-72 277.7 179 73.7
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.1e-72 277.7 297 51.9
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.3e-70 270.8 195 70.3
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.6e-66 256.5 227 58.6
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 8.1e-60 235.0 161 74.5
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 2.0e-58 230.3 150 73.3
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 1.5e-53 214.2 229 52.0
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 5.3e-51 205.7 248 46.0
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.5e-42 177.6 141 59.6
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 8.4e-41 171.8 222 40.1
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 1.5e-34 151.0 106 69.8
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 7.6e-34 148.7 124 66.1
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 2.5e-32 143.7 142 54.2
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.5e-29 133.7 91 69.2
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.9e-24 117.5 75 72.0
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 5.5e-24 115.9 73 69.9
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 7.2e-24 115.5 103 60.2
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 5.9e-18 95.9 85 64.7
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 7.7e-18 95.5 74 63.5
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 2.5e-16 90.5 95 56.8
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 3.2e-16 90.1 101 50.5
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 3.6e-15 86.7 68 61.8
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 1.0e-14 85.1 55 72.7
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 4.4e-13 79.7 73 56.2
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 5.7e-13 79.3 86 55.8
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.3e-12 78.2 74 55.4
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 1.4e-11 74.7 54 66.7
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 1.6e-10 71.2 82 48.8
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 2.5e-08 63.9 204 28.9
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 2.5e-08 63.9 236 25.8
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 3.2e-08 63.5 193 28.0
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 4.2e-08 63.2 62 51.6
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 4.2e-08 63.2 204 28.9
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 4.2e-08 63.2 292 25.0
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 5.5e-08 62.8 204 28.9
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 5.5e-08 62.8 204 28.9
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 5.5e-08 62.8 204 27.0
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 7.2e-08 62.4 194 26.3
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 9.4e-08 62.0 201 27.9
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 9.4e-08 62.0 189 29.6
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.2e-07 61.6 204 28.9
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 1.2e-07 61.6 41 70.7
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 1.6e-07 61.2 212 28.8
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 1.6e-07 61.2 194 30.4
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 1.6e-07 61.2 204 26.5
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 2.1e-07 60.8 206 29.1
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 2.1e-07 60.8 192 30.7
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 2.1e-07 60.8 204 28.4
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 2.7e-07 60.5 205 29.8
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 3.6e-07 60.1 231 27.3
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 3.6e-07 60.1 203 29.1
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 4.7e-07 59.7 202 28.7
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 4.7e-07 59.7 219 27.4
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 6.1e-07 59.3 201 27.4
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 6.1e-07 59.3 205 27.8
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 6.1e-07 59.3 192 28.1
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 8.0e-07 58.9 202 26.7
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 8.0e-07 58.9 205 29.3
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 8.0e-07 58.9 221 27.1
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 1.0e-06 58.5 205 29.3
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.0e-06 58.5 194 29.4
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 1.0e-06 58.5 205 28.3
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 1.0e-06 58.5 201 27.4
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 1.0e-06 58.5 201 27.4
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 1.0e-06 58.5 194 29.9
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 1.4e-06 58.2 206 29.1
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.4e-06 58.2 204 29.4
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 1.8e-06 57.8 202 29.2
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 1.8e-06 57.8 205 26.8
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 1.8e-06 57.8 201 27.9
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 2.3e-06 57.4 203 28.6
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 2.3e-06 57.4 190 27.4
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 2.3e-06 57.4 195 28.2
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 3.0e-06 57.0 205 27.8
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 3.0e-06 57.0 205 27.3
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 3.0e-06 57.0 203 26.6
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 4.0e-06 56.6 244 28.7
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 4.0e-06 56.6 187 26.7
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 4.0e-06 56.6 191 29.8
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 4.0e-06 56.6 199 25.6
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 5.2e-06 56.2 199 26.6
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 5.2e-06 56.2 193 25.9
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 6.7e-06 55.8 202 26.2
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 6.7e-06 55.8 188 25.5
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 8.8e-06 55.5 191 29.3
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 8.8e-06 55.5 191 29.3


User provided reference genes

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