Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 3.1e-298 1027.7 517 100.0
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.1e-236 823.2 516 79.3
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 1.4e-234 816.2 513 78.4
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 5.0e-232 807.7 515 78.4
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 2.7e-230 802.0 513 77.6
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 3.0e-229 798.5 518 75.9
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.5e-228 796.2 513 77.0
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 5.7e-228 794.3 508 77.2
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 5.3e-226 787.7 512 76.8
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.7e-225 785.4 475 78.7
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.0e-224 783.5 519 75.5
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 6.5e-224 780.8 508 75.4
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.4e-221 773.1 513 73.9
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 1.8e-221 772.7 509 74.9
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.0e-221 771.5 513 73.9
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 8.8e-221 770.4 502 74.3
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.4e-220 768.5 508 74.8
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 1.4e-218 763.1 496 75.4
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 2.4e-218 762.3 509 72.7
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 2.4e-218 762.3 504 73.4
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 2.4e-218 762.3 505 74.1
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 7.0e-218 760.8 511 75.7
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.2e-217 760.0 498 73.1
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.2e-217 760.0 501 72.9
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.6e-217 759.6 524 73.5
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.1e-215 753.4 508 73.0
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 1.9e-215 752.7 465 76.8
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 2.5e-215 752.3 508 72.8
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 3.6e-214 748.4 509 75.0
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 4.7e-214 748.0 509 74.9
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 1.8e-213 746.1 464 76.1
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 2.3e-213 745.7 464 76.1
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 5.2e-213 744.6 514 72.8
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 2.0e-212 742.7 516 72.7
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 5.7e-212 741.1 506 74.7
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 9.8e-212 740.3 468 74.4
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.7e-211 739.6 437 78.9
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 3.7e-211 738.4 523 70.4
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 3.7e-211 738.4 477 74.6
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 3.7e-211 738.4 507 71.6
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 3.1e-210 735.3 510 71.4
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 2.0e-209 732.6 464 74.4
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 1.0e-208 730.3 507 70.0
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.3e-208 729.9 516 68.8
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 1.5e-207 726.5 487 71.5
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 3.3e-207 725.3 500 71.2
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 5.6e-207 724.5 515 71.5
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.6e-206 723.0 487 70.8
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 2.1e-206 722.6 510 69.8
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.8e-206 722.2 500 70.6
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.0e-205 718.8 531 67.8
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 4.0e-205 718.4 505 71.5
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 6.8e-205 717.6 500 71.0
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 6.8e-205 717.6 458 74.7
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 8.9e-205 717.2 461 73.3
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 2.6e-204 715.7 501 70.1
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 4.4e-204 714.9 448 75.4
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 9.8e-204 713.8 484 71.3
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.3e-203 713.4 506 69.6
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 2.9e-203 712.2 526 68.1
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 3.7e-203 711.8 507 70.0
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 3.2e-202 708.8 511 69.1
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 3.2e-202 708.8 507 69.4
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 9.2e-202 707.2 455 73.0
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.2e-201 706.8 464 72.2
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 6.6e-200 701.0 505 69.7
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 1.1e-199 700.3 464 71.3
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 1.9e-199 699.5 536 66.4
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 5.6e-199 698.0 521 67.0
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 9.5e-199 697.2 515 68.3
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 2.2e-195 686.0 486 67.5
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 2.4e-194 682.6 514 65.8
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 1.7e-192 676.4 465 69.0
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.7e-192 676.4 451 73.4
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.3e-192 676.0 514 66.7
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 3.3e-191 672.2 477 68.6
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 4.3e-191 671.8 523 64.4
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.5e-188 663.3 502 65.9
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 7.8e-185 651.0 408 76.5
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.3e-184 650.2 419 74.2
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 9.5e-183 644.0 456 68.4
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.7e-179 633.3 453 70.2
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.9e-178 629.8 470 62.6
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 5.4e-178 628.2 467 64.9
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.6e-177 626.7 518 62.7
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 7.8e-177 624.4 483 62.1
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 5.6e-175 618.2 509 62.3
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 3.2e-162 575.9 508 62.8
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.6e-150 537.0 461 55.1
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 4.8e-150 535.4 466 56.0
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.0e-147 527.7 368 71.7
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 1.7e-147 526.9 338 75.4
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.9e-146 523.5 314 78.3
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 3.5e-145 519.2 321 77.9
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 6.5e-139 498.4 444 52.9
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 2.4e-133 479.9 340 69.4
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.0e-131 472.2 405 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 6.7e-120 435.3 401 52.6
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.8e-118 429.9 278 74.1
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 5.5e-114 415.6 308 63.0
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.6e-108 397.5 383 50.4
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 3.8e-107 392.9 298 66.8
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 8.0e-97 358.6 241 71.4
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 8.9e-96 355.1 407 48.6
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 3.3e-90 336.7 471 42.3
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 1.2e-89 334.7 287 61.7
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 1.9e-82 310.8 226 69.5
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 5.2e-80 302.8 216 68.1
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 2.6e-63 247.3 499 32.3
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.2e-54 217.6 169 66.3
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.1e-40 172.2 139 60.4
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 5.5e-37 159.8 447 29.8
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.1e-29 135.6 93 71.0
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 5.5e-29 133.3 88 75.0
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 6.9e-24 116.3 455 24.8
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.5e-23 115.2 377 25.2
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.9e-23 113.2 88 63.6
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.7e-19 99.8 65 69.2
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 8.8e-19 99.4 73 61.6
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 4.3e-18 97.1 90 56.7
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.2e-17 94.7 178 30.9
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 4.8e-17 93.6 104 51.9
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 7.2e-13 79.7 88 50.0
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.7e-11 73.2 78 53.8
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 7.4e-10 69.7 40 67.5
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 4.8e-09 67.0 80 42.5
RcHm_v2.0_Chr3g0482901 Rosa chinensis HOM05D005888 ORTHO05D007791 3.8e-06 57.4 42 71.4
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 5.0e-06 57.0 36 66.7


User provided reference genes

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